| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 2 (0.070) | 32 (1.070) | 18/164 | 0.4 | 94.1% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 2 (0.070) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTA > NZ_CP009273/1613542‑1613718 | aCTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAg < 1:550911‑M1/90‑2 (MQ=255) ccGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttg > 2:444363‑M1/1‑86 (MQ=255) aGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgaca < 1:444363‑M1/90‑21 (MQ=255) tGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaa < 2:327179‑M1/90‑39 (MQ=255) gCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg > 2:800787‑M1/1‑47 (MQ=255) gCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg < 1:800787‑M1/74‑28 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttac > 2:842341‑M1/1‑45 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttac > 2:7644‑M1/1‑45 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtact < 2:816087‑M1/78‑34 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtact > 1:816087‑M1/1‑45 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg < 1:28278‑M1/72‑28 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg > 2:28278‑M1/1‑45 (MQ=255) gTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGc < 2:879725/45‑1 (MQ=255) gTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGc > 1:879725/1‑45 (MQ=255) cTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcg > 2:161886‑M1/1‑32 (MQ=255) cTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaa < 2:305732‑M1/70‑39 (MQ=255) cTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaa > 1:305732‑M1/1‑32 (MQ=255) gATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca < 2:259654‑M1/90‑62 (MQ=255) gATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca < 2:663655‑M1/90‑62 (MQ=255) gATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca < 1:7644‑M1/90‑62 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 2:413002‑M1/1‑25 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 2:585252‑M1/1‑25 (MQ=255) gCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatat > 1:728611‑M1/1‑25 (MQ=255) ccTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg > 2:528035‑M1/1‑24 (MQ=255) ccTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg > 2:701871‑M1/1‑24 (MQ=255) ccTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg < 1:701871‑M1/51‑28 (MQ=255) ccTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaagcgcgg < 1:528035‑M1/51‑28 (MQ=255) tGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca > 1:282605‑M1/1‑8 (MQ=255) tGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggca < 2:282605‑M1/69‑62 (MQ=255) gggTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccatcaat > 2:473641‑M1/1‑7 (MQ=255) ggTGGAgttgccgaacccgaatgacaagcgcggcgta < 2:140332‑M1/37‑32 (MQ=255) ggTGGAgttgccgaacccgaatgacaagcgcggcgta > 1:140332‑M1/1‑6 (MQ=255) ggAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccatcaattagt < 2:307883‑M1/90‑88 (MQ=255) gAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgccatcaattagtt < 2:873673‑M1/90‑89 (MQ=255) | ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTA > NZ_CP009273/1613542‑1613718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |