New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1317796 =	28 (1.010)	3 (0.120)	3/152	2.2	12.0%	coding (320/882 nt)	yciV	RNase AM
	?	NZ_CP009273	1317821 =	19 (0.760)					coding (345/882 nt)	yciV	RNase AM
Rejected: Frequency below/above cutoff threshold.

AGTCGTTGTGCGCCTTCCAGCGCCCCAGGTATTTGCGCTTTTTCAAGTCTTTCGGCAATCAGCTGCGCCCGCTGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/1317874‑1317796 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgattgcCGAAAGACTTGAAAAAGCGCAAATACCTGGGGC  >  NZ_CP009273/1317821‑1317853                                                                                                                  AGTCGTTGTGCGCCTTCCAGCGCCCCAGGTATTTGCGCTTTTTCAAGTCTTTCGGCAATCAGCTGCGCCCGCTGATTGCCGAAAGACTTG                        >  1:170070/1‑90           CGCCTTCCAGCGCCCCAGGTATTTGCGCTTTTTCAAGTCTTTCGGCAATCAGCTGCGCCCGCTGATTGCCGAAAGACTTGAAAAAGCGCA              <  2:163756/90‑1                       CCCCAGGTATTTGCGCTTTTTCAAGTCTTTCGGCAATCAGCTGCGCCCGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGC  <  2:170070/90‑1                                                                                                                  AGTCGTTGTGCGCCTTCCAGCGCCCCAGGTATTTGCGCTTTTTCAAGTCTTTCGGCAATCAGCTGCGCCCGCTGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/1317874‑1317796 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgattgcCGAAAGACTTGAAAAAGCGCAAATACCTGGGGC  >  NZ_CP009273/1317821‑1317853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.