New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1317796 =	28 (1.010)	3 (0.120)	3/152	2.2	12.0%	coding (320/882 nt)	yciV	RNase AM
	?	NZ_CP009273	1317821 =	19 (0.760)					coding (345/882 nt)	yciV	RNase AM
Rejected: Frequency below/above cutoff threshold.

TTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGGGCGGCGCAGTGACGCGCG  >  NZ_CP009273/1317742‑1317900                                                                                |                                                                                agtcgttgtgcgccttccagcgccccaggtatttgcgctttttcaagtctttcggcaatcagctgcgcccgctgattgcCGAAAGACTTg                                                                       >  1:170070‑M2/80‑90 (MQ=255)    atatTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaa                                                                    >  2:182195/1‑90 (MQ=255)      atTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa                                                                  >  2:749095/1‑90 (MQ=255)      atTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa                                                                  <  2:69576/90‑1 (MQ=255)      atTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa                                                                  >  2:468163/1‑90 (MQ=255)           cgccttccagcgccccaggtatttgcgctttttcaagtctttcggcaatcagctgcgcccgctgattgcCGAAAGACTTGAAAAAGCGCa                                                             <  2:163756‑M2/21‑1 (MQ=255)            cATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                                            <  2:408012/90‑1 (MQ=255)                 gCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATAcc                                                       >  2:536648/1‑90 (MQ=255)                    aaTGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTgg                                                    <  2:542546/90‑1 (MQ=255)                      gccccaggtatttgcgctttttcaagtctttcgGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTgggg                                                  <  2:170070‑M1/57‑1 (MQ=255)                       gtgtgAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAAACTTGAAAAAGCGCAAATACCTGGGgc                                                 >  1:205411/1‑90 (MQ=255)                       ccccaggtatttgcgctttttcaagtctttcggcaatcagctgcgcccgctgattgcCGAAAGACTTGAAAAAGCGCAAATACCTGGGgc                                                 <  2:170070‑M2/33‑1 (MQ=255)                              ttCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGaa                                          >  2:236138/1‑90 (MQ=255)                                  tgcgctttttcaagtctttcgGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGgcg                                      <  2:163756‑M1/69‑1 (MQ=255)                                  tCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                                            <  2:296688/68‑1 (MQ=255)                                  tCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                                            >  1:296688/1‑68 (MQ=255)                                       cagcagACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACaa                                 >  2:138567/1‑90 (MQ=255)                                       cagcagACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACaa                                 <  1:179532/90‑1 (MQ=255)                                            caagtctttcgGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACt                            >  1:170070‑M1/12‑90 (MQ=255)                                               agaACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGgc                         >  2:55905/1‑90 (MQ=255)                                                     gcgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                                            >  2:185390/1‑49 (MQ=255)                                                     gcgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                                            <  1:185390/49‑1 (MQ=255)                                                      cgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGggc                  >  1:163064/1‑90 (MQ=255)                                                      cgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGggc                  <  1:302360/90‑1 (MQ=255)                                                                      aGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGGGCGGCGCAGTGAcgcgcg  >  2:17243/1‑90 (MQ=255)                                                                                |                                                                                TTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGGGCGGCGCAGTGACGCGCG  >  NZ_CP009273/1317742‑1317900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.