New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1317796 =	28 (1.010)	3 (0.120)	3/152	2.2	12.0%	coding (320/882 nt)	yciV	RNase AM
	?	NZ_CP009273	1317821 =	19 (0.760)					coding (345/882 nt)	yciV	RNase AM
Rejected: Frequency below/above cutoff threshold.

ATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGGGC  >  NZ_CP009273/1317712‑1317884                                                                                     |                                                                                         aTCGTGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCCCTAAGGTCCTAGTTCCTGGCGCAATAGACAAAACTACGCaacc                                                                                     >  1:389379/1‑88 (MQ=255) aTCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATc                                                                                     >  2:5629/1‑90 (MQ=255) aTCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATc                                                                                     >  2:3973/1‑90 (MQ=255) aTCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAAAGGCGCAATc                                                                                     >  1:627576/1‑90 (MQ=255)   cATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAg                                                                                   <  2:341253/90‑1 (MQ=255)        aaTTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGgc                                                                              <  2:535457/90‑1 (MQ=255)                  gTCGGGCTGAATATTGATATTACTCATCCGCTAATGTTTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGAtt                                                                    >  1:263555/1‑90 (MQ=255)                    cGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCGATCAGCGGGCGCAGCTGATTGc                                                                  >  2:720699/1‑90 (MQ=255)                                  atatTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaa                                                    >  2:182195/1‑90 (MQ=255)                                    atTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa                                                  >  2:749095/1‑90 (MQ=255)                                    atTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa                                                  <  2:69576/90‑1 (MQ=255)                                    atTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa                                                  >  2:468163/1‑90 (MQ=255)                                       aCTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGAtt                                                                    <  1:377972/69‑1 (MQ=255)                                       aCTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGAtt                                                                    >  2:377972/1‑69 (MQ=255)                                          cATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                            <  2:408012/90‑1 (MQ=255)                                               gCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATAcc                                       >  2:536648/1‑90 (MQ=255)                                                  aaTGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTgg                                    <  2:542546/90‑1 (MQ=255)                                                    gccccaggtatttgcgctttttcaagtctttcgGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTgggg                                  <  2:170070‑M1/57‑1 (MQ=255)                                                     gtgtgAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAAACTTGAAAAAGCGCAAATACCTGGGgc                                 >  1:205411/1‑90 (MQ=255)                                                            ttCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGaa                          >  2:236138/1‑90 (MQ=255)                                                                tgcgctttttcaagtctttcgGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGgcg                      <  2:163756‑M1/69‑1 (MQ=255)                                                                tCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                            <  2:296688/68‑1 (MQ=255)                                                                tCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                            >  1:296688/1‑68 (MQ=255)                                                                     cagcagACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACaa                 >  2:138567/1‑90 (MQ=255)                                                                     cagcagACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACaa                 <  1:179532/90‑1 (MQ=255)                                                                          caagtctttcgGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACt            >  1:170070‑M1/12‑90 (MQ=255)                                                                             agaACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGgc         >  2:55905/1‑90 (MQ=255)                                                                                   gcgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                            >  2:185390/1‑49 (MQ=255)                                                                                   gcgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCaa                                            <  1:185390/49‑1 (MQ=255)                                                                                    cgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGggc  <  1:302360/90‑1 (MQ=255)                                                                                    cgcAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGggc  >  1:163064/1‑90 (MQ=255)                                                                                     |                                                                                         ATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAAGCGCAAATACCTGGGGCGCTGGAAGGCGCACAACGACTGGCGCAGGGC  >  NZ_CP009273/1317712‑1317884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.