| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 3,512,038 | Δ42 bp | coding (345‑386/522 nt) | aroK ← | shikimate kinase AroK |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 3512038 | 3512079 | 42 | 53 [0] | [0] 53 | aroK | shikimate kinase AroK |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3512037 | 0 (0.000) | 50 (1.010) | 33/154 | 0.2 | 100% | coding (387/522 nt) | aroK | shikimate kinase AroK |
| ? | NZ_CP009273 | 3512080 = | 0 (0.000) | coding (344/522 nt) | aroK | shikimate kinase AroK | |||||
TTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3511945‑3512037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAT > NZ_CP009273/3512080‑3512166 TTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCA > 1:1236373/1‑90 CGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCT < 2:1286479/90‑1 GCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTG > 2:106178/1‑90 GCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTG < 1:1102375/90‑1 TTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGT > 2:460791/1‑90 GTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGT > 2:581298/1‑90 GTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGT > 1:1251705/1‑90 GTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGT > 2:1421103/1‑84 GTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGT < 1:1421103/84‑1 ACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTG > 2:1488596/1‑90 AATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTT > 2:745206/1‑90 AATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTT > 1:974924/1‑90 AATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTT > 1:665058/1‑90 TGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTT > 1:532134/1‑90 GGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTC > 1:805485/1‑90 TCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGA > 2:1031098/1‑90 TCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGC > 2:281408/1‑83 TCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGC < 1:281408/83‑1 GTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGT > 1:777644/1‑90 TCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTC < 2:1582888/90‑1 TCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTC < 2:285202/90‑1 GGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGT > 1:1438876/1‑90 CAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTT < 1:847835/90‑1 TCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAA < 1:106178/90‑1 CTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAG > 1:1233327/1‑90 CTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAG > 2:14830/1‑90 AGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACA > 1:707297/1‑90 GCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAA > 1:1177006/1‑90 GCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAA > 2:722841/1‑90 GCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAA > 1:629439/1‑90 CGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAAC > 1:130282/1‑90 CGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAAC > 2:533959/1‑90 GATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAA > 1:1381940/1‑80 GATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAA < 2:1381940/80‑1 TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCA > 2:506038/1‑90 TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCA > 2:1533439/1‑90 TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCC > 2:133072/1‑89 TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCC < 1:133072/89‑1 TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAA < 1:1020623/73‑1 TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAA > 2:1020623/1‑73 GCGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACG < 2:1235951/90‑1 CGTTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGA < 2:532134/90‑1 TTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGC > 1:1165829/1‑90 TTCATTGGCCAACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGC > 1:1102063/1‑90 ACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGT > 2:1473645/1‑90 ACGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGT > 2:453463/1‑90 CGCTTCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTT > 1:1141522/1‑90 TCCAGAACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGC < 1:533959/90‑1 AACTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTC < 1:1016528/90‑1 CTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAC < 2:502670/90‑1 CTTCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAC < 2:745980/90‑1 CGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAT < 2:176323/90‑1 CTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAC < 2:126107/83‑1 CTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAC > 1:126107/1‑83 TTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3511945‑3512037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAT > NZ_CP009273/3512080‑3512166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |