| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 3,512,038 | Δ42 bp | coding (345‑386/522 nt) | aroK ← | shikimate kinase AroK |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 3512038 | 3512079 | 42 | 53 [0] | [0] 53 | aroK | shikimate kinase AroK |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3512037 | 0 (0.000) | 50 (1.010) | 33/154 | 0.2 | 100% | coding (387/522 nt) | aroK | shikimate kinase AroK |
| ? | NZ_CP009273 | 3512080 = | 0 (0.000) | coding (344/522 nt) | aroK | shikimate kinase AroK | |||||
CGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACG > NZ_CP009273/3511949‑3512124 | cgcTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCt < 2:1286479‑M1/90‑2 (MQ=255) gcTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtg < 1:1102375‑M1/90‑3 (MQ=255) gcTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtg > 2:106178‑M1/1‑88 (MQ=255) ttGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgt > 2:460791‑M1/1‑85 (MQ=255) gTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagt > 2:581298‑M1/1‑75 (MQ=255) gTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagt > 1:1251705‑M1/1‑75 (MQ=255) gTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgt > 2:1421103‑M1/1‑75 (MQ=255) gTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgt < 1:1421103‑M1/84‑10 (MQ=255) aCGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttg > 2:1488596‑M1/1‑73 (MQ=255) aaTGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgctt > 2:745206‑M1/1‑70 (MQ=255) aaTGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgctt > 1:974924‑M1/1‑70 (MQ=255) aaTGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgctt > 1:665058‑M1/1‑70 (MQ=255) tGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgctttt > 1:532134‑M1/1‑68 (MQ=255) ggTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttc > 1:805485‑M1/1‑67 (MQ=255) tCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcga > 2:1031098‑M1/1‑65 (MQ=255) tCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgc > 2:281408‑M1/1‑65 (MQ=255) tCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgc < 1:281408‑M1/83‑19 (MQ=255) gTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggt > 1:777644‑M1/1‑61 (MQ=255) tCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtc < 2:1582888‑M1/90‑31 (MQ=255) tCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtc < 2:285202‑M1/90‑31 (MQ=255) ggCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgt > 1:1438876‑M1/1‑58 (MQ=255) cAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgttt < 1:847835‑M1/90‑35 (MQ=255) tctcTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaa < 1:106178‑M1/90‑38 (MQ=255) ctctTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaag > 2:14830‑M1/1‑52 (MQ=255) ctctTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaag > 1:1233327‑M1/1‑52 (MQ=255) aGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgaca > 1:707297‑M1/1‑42 (MQ=255) gCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaa > 1:1177006‑M1/1‑41 (MQ=255) gCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaa > 1:629439‑M1/1‑41 (MQ=255) gCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaa > 2:722841‑M1/1‑41 (MQ=255) cGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaac > 2:533959‑M1/1‑40 (MQ=255) cGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaac > 1:130282‑M1/1‑40 (MQ=255) gATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataa > 1:1381940‑M1/1‑38 (MQ=255) gATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataa < 2:1381940‑M1/80‑43 (MQ=255) ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgcca > 2:506038‑M1/1‑36 (MQ=255) ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgcca > 2:1533439‑M1/1‑36 (MQ=255) ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgcc > 2:133072‑M1/1‑36 (MQ=255) ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgcc < 1:133072‑M1/89‑54 (MQ=255) ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaa < 1:1020623‑M1/73‑38 (MQ=255) ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaa > 2:1020623‑M1/1‑36 (MQ=255) gCGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacg < 2:1235951‑M1/90‑57 (MQ=255) cGTTCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacga < 2:532134‑M1/90‑58 (MQ=255) ttCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagc > 1:1165829‑M1/1‑31 (MQ=255) ttCATTGGCCAACGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagc > 1:1102063‑M1/1‑31 (MQ=255) aCGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggt > 2:1473645‑M1/1‑20 (MQ=255) aCGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggt > 2:453463‑M1/1‑20 (MQ=255) cGCTTCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggtt > 1:1141522‑M1/1‑19 (MQ=255) tCCAGAACTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgc < 1:533959‑M1/90‑76 (MQ=255) aaCTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgcgtttc < 1:1016528‑M1/90‑81 (MQ=255) cTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgcgtttcac < 2:502670‑M1/90‑83 (MQ=255) cTTCACGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgcgtttcac < 2:745980‑M1/90‑83 (MQ=255) cGCtgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgcgtttcacgggat < 2:176323‑M1/90‑88 (MQ=255) ctgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgcgtttcac < 2:126107‑M1/83‑83 (MQ=255) ctgcgtgcgtgcaagttgcttttcgatggtcgtttcaagataaacgacaacgccacgagcggaaagacggttacgcgtttcac > 1:126107‑M1/1‑1 (MQ=255) | CGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACG > NZ_CP009273/3511949‑3512124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |