Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NZ_CP009273 | 3,512,038 | Δ42 bp | coding (345‑386/522 nt) | aroK ← | shikimate kinase AroK |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 3512038 | 3512079 | 42 | 53 [0] | [0] 53 | aroK | shikimate kinase AroK |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 3512037 | 0 (0.000) | 50 (1.010) | 33/154 | 0.2 | 100% | coding (387/522 nt) | aroK | shikimate kinase AroK |
? | NZ_CP009273 | 3512080 = | 0 (0.000) | coding (344/522 nt) | aroK | shikimate kinase AroK |
CATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAT > NZ_CP009273/3511991‑3512166 | cgctttgatcatcagtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgct < 2:1286479‑M2/1‑1 (MQ=255) gctttgatcatcagtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgctg < 1:1102375‑M2/2‑1 (MQ=255) gctttgatcatcagtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgctg > 2:106178‑M2/89‑90 (MQ=255) ttgatcatcagtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgctgcgt > 2:460791‑M2/86‑90 (MQ=255) gtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTgcgtgcgt > 2:1421103‑M2/76‑84 (MQ=255) gtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTgcgtgcgt < 1:1421103‑M2/9‑1 (MQ=255) gtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGt > 2:581298‑M2/76‑90 (MQ=255) gtacgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGt > 1:1251705‑M2/76‑90 (MQ=255) acgaatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTg > 2:1488596‑M2/74‑90 (MQ=255) aatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCtt > 2:745206‑M2/71‑90 (MQ=255) aatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCtt > 1:974924‑M2/71‑90 (MQ=255) aatggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCtt > 1:665058‑M2/71‑90 (MQ=255) tggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCtttt > 1:532134‑M2/69‑90 (MQ=255) ggtcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTc > 1:805485‑M2/68‑90 (MQ=255) tcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGc < 1:281408‑M2/18‑1 (MQ=255) tcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGc > 2:281408‑M2/66‑83 (MQ=255) tcacgtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGa > 2:1031098‑M2/66‑90 (MQ=255) gtcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGt > 1:777644‑M2/62‑90 (MQ=255) tcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTc < 2:285202‑M2/30‑1 (MQ=255) tcggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTc < 2:1582888‑M2/30‑1 (MQ=255) ggcaatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGt > 1:1438876‑M2/59‑90 (MQ=255) caatctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGttt < 1:847835‑M2/34‑1 (MQ=255) tctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCaa < 1:106178‑M2/37‑1 (MQ=255) ctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAg > 1:1233327‑M2/53‑90 (MQ=255) ctcttcatacagcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAg > 2:14830‑M2/53‑90 (MQ=255) agcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACa > 1:707297‑M2/43‑90 (MQ=255) gcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACaa > 1:629439‑M2/42‑90 (MQ=255) gcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACaa > 1:1177006‑M2/42‑90 (MQ=255) gcggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACaa > 2:722841‑M2/42‑90 (MQ=255) cggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAAc > 1:130282‑M2/41‑90 (MQ=255) cggattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAAc > 2:533959‑M2/41‑90 (MQ=255) gattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATaa > 1:1381940‑M2/39‑80 (MQ=255) gattgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATaa < 2:1381940‑M2/42‑1 (MQ=255) ttgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCaa < 1:1020623‑M2/37‑1 (MQ=255) ttgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCaa > 2:1020623‑M2/37‑73 (MQ=255) ttgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGcc > 2:133072‑M2/37‑89 (MQ=255) ttgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGcc < 1:133072‑M2/53‑1 (MQ=255) ttgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCa > 2:1533439‑M2/37‑90 (MQ=255) ttgcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCa > 2:506038‑M2/37‑90 (MQ=255) gcgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACg < 2:1235951‑M2/56‑1 (MQ=255) cgttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGa < 2:532134‑M2/57‑1 (MQ=255) ttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGc > 1:1102063‑M2/32‑90 (MQ=255) ttcattggccaacgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGc > 1:1165829‑M2/32‑90 (MQ=255) acgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGt > 2:1473645‑M2/21‑90 (MQ=255) acgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGt > 2:453463‑M2/21‑90 (MQ=255) cgcttccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGtt > 1:1141522‑M2/20‑90 (MQ=255) tccagaacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTAcgc < 1:533959‑M2/75‑1 (MQ=255) aacttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTc < 1:1016528‑M2/80‑1 (MQ=255) cttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAc < 2:502670‑M2/82‑1 (MQ=255) cttcacgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAc < 2:745980‑M2/82‑1 (MQ=255) cgcTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAt < 2:176323‑M2/87‑1 (MQ=255) cTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAc > 1:126107‑M2/2‑83 (MQ=255) cTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCAc < 2:126107‑M2/82‑1 (MQ=255) | CATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAT > NZ_CP009273/3511991‑3512166 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |