mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 91 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 68.9% | 10.7 / 37.6 | 45 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 64.4% | ‑0.8 / 39.1 | 45 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 60.7% | 19.9 / 30.8 | 28 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 585,390 | 0 | T | G | 60.0% | ‑6.5 / 14.4 | 15 | T341P (ACC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 1,673,561 | 0 | A | C | 60.0% | 10.2 / 15.5 | 20 | Y293S (TAC→TCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 60.0% | 3.6 / 21.4 | 26 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 57.1% | ‑4.9 / 23.4 | 21 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 57.1% | 15.8 / 25.1 | 21 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 4,186,009 | 0 | T | G | 57.1% | 11.5 / 16.4 | 14 | T7P (ACC→CCC) | thiC | phosphomethylpyrimidine synthase ThiC |
| * | NZ_CP009273 | 2,334,224 | 0 | T | A | 56.0% | 4.3 / 26.4 | 25 | D1142V (GAT→GTT) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 55.2% | 31.5 / 40.4 | 29 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 4,561,000 | 0 | A | C | 55.2% | 27.3 / 38.2 | 30 | V131G (GTG→GGG) | yjiR | PLP‑dependent aminotransferase family protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 54.8% | 16.6 / 43.0 | 31 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 16,734 | 0 | A | C | 54.5% | 19.7 / 28.8 | 22 | intergenic (+177/+17) | BW25113_RS00080/mokC | IS4‑like element IS421 family transposase/type I toxin‑antitoxin system toxin MokC |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.5% | 14.9 / 38.5 | 33 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,213,870 | 0 | A | C | 54.2% | 23.5 / 30.1 | 24 | T363P (ACC→CCC) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 54.2% | 7.3 / 30.9 | 24 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 54.2% | 21.2 / 29.6 | 24 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 3,924,078 | 0 | T | G | 54.2% | 19.6 / 28.8 | 24 | T126P (ACC→CCC) | ravA | ATPase RavA |
| * | NZ_CP009273 | 276,800 | 0 | A | C | 53.8% | 67.8 / 79.4 | 52 | Y299D (TAT→GAT) | yagA | IS481‑like element ISEc19 family transposase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3499137 = | 45 (1.220) | 3 (0.090) | 3/154 | 3.0 | 6.8% | coding (243/1086 nt) | yhfS | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme |
| ? | NZ_CP009273 | 3499152 = | 41 (1.210) | coding (228/1086 nt) | yhfS | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme | |||||