| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1613558 = | 18 (1.020) | 16 (0.920) | 15/166 | 0.2 | 49.4% | coding (182/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | = 1613717 | 15 (0.860) | coding (341/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
CGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/1613640‑1613558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTT < NZ_CP009273/1613717‑1613630 CGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGAT < 1:370360/90‑1CGGCAACATTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCCCCCAGGTCGACCGACAATACCTTTTAATTGAT < 2:508225/90‑1 ACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCAT < 1:431504/90‑1 TTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATTGTT < 2:46307/90‑1 TTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTT > 1:267355/1‑74 TTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTT < 2:267355/74‑1 ACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATTGTTCACA > 2:160863/1‑90 TTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGTCGGCCTTGTTCACATATTCCCcc > 2:64619/1‑88 AGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATTGTTCACATATTCCCGCGCCc > 2:424111/1‑89 CCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATGCCTTTTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGT < 1:398422/90‑1 CGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATT < 2:295598/50‑1 CGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATT > 1:295598/1‑50 CAGTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGC > 2:65102/1‑90 GTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAA > 1:321155/1‑73 GTGCTCCCAGGTCGACCGACAATACCTTTTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAA < 2:321155/73‑1 GACCGACAATACCTTTTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCG > 2:273452/1‑90 TTTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGT < 1:453133/44‑1 TTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTT < 1:160863/90‑1 CGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAATACCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/1613640‑1613558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTT < NZ_CP009273/1613717‑1613630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |