| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1613558 = | 18 (1.020) | 16 (0.920) | 15/166 | 0.2 | 49.4% | coding (182/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | = 1613717 | 15 (0.860) | coding (341/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
AAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCC > NZ_CP009273/1613630‑1613803 | aaaGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaa < 1:160863‑M2/90‑3 (MQ=255)aaaGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAg > 1:223087/1‑90 (MQ=255)aaaGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAg > 1:56083/1‑90 (MQ=255) aGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGtt < 2:158355/90‑1 (MQ=255) gCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCa < 1:46307/90‑1 (MQ=255) aCCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGAcc > 1:105771/1‑90 (MQ=255) cGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaaaaggtattgtcggtc > 2:273452‑M2/1‑73 (MQ=255) tGACAAGCGCGGCGTACTGGTAAAACTTACCGCCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCa < 2:408333/90‑1 (MQ=255) gcgTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaaaaggtattgtcggtcgacctgggagcactg > 2:65102‑M2/1‑58 (MQ=255) aCTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaaaaggcattgtcggtcgacctgggagcactgacccgtatgctgg < 1:398422‑M2/90‑46 (MQ=255) ttACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaaaaggtattgtcggtcgacctgggagcac < 2:321155‑M2/73‑31 (MQ=255) ttACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaaaaggtattgtcggtcgacctgggagcac > 1:321155‑M2/1‑43 (MQ=255) ttACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGAcggcgg > 2:60507/1‑90 (MQ=255) ttACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGAcggcgg > 2:510785/1‑90 (MQ=255) accaccGGCGGCGCGGCAATATGTGAACAATGCCATCAATTaaa < 1:453133‑M2/44‑4 (MQ=255) accaccGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGt < 2:453133/44‑1 (MQ=255) gggcgcgggaATATGTGAACAATGCCATCAATTaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtct > 2:424111‑M2/2‑33 (MQ=255) ggcgcggcAATATGTGAACAATGCCATCAATTAGTTGGCCAGGGCCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCa < 2:351738/90‑1 (MQ=255) ggcgcggcAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCa < 1:337025/90‑1 (MQ=255) gggggaaTATGTGAACAAGGCCGACAATTaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaa > 2:64619‑M2/3‑29 (MQ=255) tgtgAACAATGCCATCAATTaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggt > 2:160863‑M2/1‑20 (MQ=255) aaCAATGCCATCAATTaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaa < 2:46307‑M2/90‑75 (MQ=255) aaTGCCATCAATTaaaaggtattgtcggtcgacctgggagcactgacccg > 1:295598‑M2/1‑13 (MQ=255) aaTGCCATCAATTaaaaggtattgtcggtcgacctgggagcactgacccg < 2:295598‑M2/50‑38 (MQ=255) aTGCCATCAATTaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaaaggt < 1:431504‑M2/90‑79 (MQ=255) aTGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTg < 2:377765/77‑1 (MQ=255) aTGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTg > 1:377765/1‑77 (MQ=255) aTGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTaa > 2:269124/1‑90 (MQ=255) aTCAATTaaaaggtattgtcggtcgacctgggggcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaaatgttgccg < 2:508225‑M2/90‑84 (MQ=255) aTCAATTaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaaaggttgccg < 1:370360‑M2/90‑84 (MQ=255) aaTTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTcc < 2:476549/90‑1 (MQ=255) | AAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCC > NZ_CP009273/1613630‑1613803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |