| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4229668 = | 51 (1.460) | 4 (0.130) | 4/146 | 2.1 | 9.2% | intergenic (+10/+37) | yjbH/BW25113_RS25330 | YjbH domain‑containing protein/periplasmic protein |
| ? | NZ_CP009273 | 4229700 = | 35 (1.150) | intergenic (+42/+5) | yjbH/BW25113_RS25330 | YjbH domain‑containing protein/periplasmic protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATC > NZ_CP009273/4229580‑4229755 | ggaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgaa > 1:881701‑M1/89‑90 (MQ=255)ggaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgaa > 1:955152‑M1/89‑90 (MQ=255)gcgTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGaaa < 1:823705/90‑1 (MQ=255)gcgTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGaaa < 1:607401/90‑1 (MQ=255)gcgTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGaaa < 2:378992/90‑1 (MQ=255) gTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAgg > 2:153309/1‑90 (MQ=255) gTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAgg > 2:512179/1‑90 (MQ=255) ggtggtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCa < 1:569279/90‑1 (MQ=255) gaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgAAGGTGCCAg < 1:281727‑M1/10‑1 (MQ=255) gaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgAAGGTGCCAg < 1:399699‑M1/10‑1 (MQ=255) ggtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGtt > 1:498215/1‑90 (MQ=255) cAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTc < 1:153309/90‑1 (MQ=255) cAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTc > 2:488402/1‑90 (MQ=255) aCTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcact > 2:251867/1‑90 (MQ=255) aCTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcact > 2:748575/1‑90 (MQ=255) ttGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcactca > 1:904784/1‑90 (MQ=255) ttGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcactca > 2:953488/1‑90 (MQ=255) tGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcactcac < 1:672075/90‑1 (MQ=255) gCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTgg < 1:733825/90‑1 (MQ=255) cGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGc < 1:512179/90‑1 (MQ=255) gTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCa > 2:705979/1‑90 (MQ=255) ccagatcgcaaaccgggagggaactgcgttcctgatggctcgacaggccattaagaatgAAGGTGCCAGTTTTCGCACTCACTGGGACCt < 2:944792‑M1/31‑1 (MQ=255) ttCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTc < 2:297185/90‑1 (MQ=255) ccAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGtttt > 1:966459/1‑69 (MQ=255) ccAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGtttt < 2:966459/69‑1 (MQ=255) gTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTaa < 1:383529/90‑1 (MQ=255) tgacatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATgg < 2:30807/90‑1 (MQ=255) acatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGcc < 1:223269/90‑1 (MQ=255) atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcac > 2:808411/1‑61 (MQ=255) atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcac < 1:808411/61‑1 (MQ=255) atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTg > 2:347197/1‑90 (MQ=255) atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTg > 1:424192/1‑90 (MQ=255) acCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCg < 2:838824/90‑1 (MQ=255) acCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCg < 1:399370/90‑1 (MQ=255) acCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCg > 1:832570/1‑90 (MQ=255) cAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAg < 2:904784/90‑1 (MQ=255) gCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc > 1:273660/1‑90 (MQ=255) gCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc > 2:195614/1‑90 (MQ=255) gCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc > 2:399740/1‑90 (MQ=255) cGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAg > 1:529935/1‑90 (MQ=255) gTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGc < 2:503454/56‑1 (MQ=255) gTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGc > 1:503454/1‑56 (MQ=255) gTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAgg > 1:329849/1‑90 (MQ=255) tggctcgacaggccattaagaatgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGc < 2:385425‑M1/66‑1 (MQ=255) gTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGc < 2:65200/90‑1 (MQ=255) gTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGc < 2:785838/90‑1 (MQ=255) tCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCAc > 2:224185/1‑90 (MQ=255) gCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTcc < 1:504956/90‑1 (MQ=255) aaGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCgg > 2:356031/1‑90 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCCCCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 1:748044/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 2:220402/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 2:132873/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 2:832570/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 1:32414/90‑1 (MQ=255) cATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTg < 1:705979/90‑1 (MQ=255) gggAAAGGTGCCAGCTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGa < 1:824847/90‑1 (MQ=255) atgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAt < 1:694516‑M1/87‑1 (MQ=255) tgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATc > 2:694516‑M1/3‑90 (MQ=255) gAAAGGTGCCAGTTTTTGCACTCCCTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCCCTCCCGGTTTGGGATc < 1:93776/90‑1 (MQ=255) | GCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATC > NZ_CP009273/4229580‑4229755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |