| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4229668 = | 51 (1.460) | 4 (0.130) | 4/146 | 2.1 | 9.2% | intergenic (+10/+37) | yjbH/BW25113_RS25330 | YjbH domain‑containing protein/periplasmic protein |
| ? | NZ_CP009273 | 4229700 = | 35 (1.150) | intergenic (+42/+5) | yjbH/BW25113_RS25330 | YjbH domain‑containing protein/periplasmic protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCC > NZ_CP009273/4229611‑4229787 | ttCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTc < 2:297185/90‑1 (MQ=255) gatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgaaggtgccagtgagtgcgaaaactggcaccttCa > 2:694516‑M2/89‑90 (MQ=255) atcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgaaggtgccagtgagtgcgaaaactggcaccttCAt < 1:694516‑M2/3‑1 (MQ=255) gTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTaa < 1:383529/90‑1 (MQ=255) tgacatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATgg < 2:30807/90‑1 (MQ=255) acatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGcc < 1:223269/90‑1 (MQ=255) atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTg > 2:347197/1‑90 (MQ=255) atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTg > 1:424192/1‑90 (MQ=255) acCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCg < 2:838824/90‑1 (MQ=255) acCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCg < 1:399370/90‑1 (MQ=255) acCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCg > 1:832570/1‑90 (MQ=255) cAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAg < 2:904784/90‑1 (MQ=255) gCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc > 1:273660/1‑90 (MQ=255) gCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc > 2:195614/1‑90 (MQ=255) gCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc > 2:399740/1‑90 (MQ=255) gcgttcctgatggctcgacaggccattaagaatgaaggtgccagtgagtgcgaaaactggcaccttCATTCTTAATGGCCTGTCGAGCCa < 2:385425‑M2/24‑1 (MQ=255) cGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAg > 1:529935/1‑90 (MQ=255) gTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAgg > 1:329849/1‑90 (MQ=255) tggctcgacaggccattaagaatgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGc < 2:385425‑M1/66‑1 (MQ=255) gTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGc < 2:65200/90‑1 (MQ=255) gTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGc < 2:785838/90‑1 (MQ=255) tCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCAc > 2:224185/1‑90 (MQ=255) gCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTcc < 1:504956/90‑1 (MQ=255) aaGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCgg > 2:356031/1‑90 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCCCCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 1:748044/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 1:32414/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 2:832570/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 2:220402/90‑1 (MQ=255) gTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGtt < 2:132873/90‑1 (MQ=255) cATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTg < 1:705979/90‑1 (MQ=255) gggAAAGGTGCCAGCTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGa < 1:824847/90‑1 (MQ=255) atgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAt < 1:694516‑M1/87‑1 (MQ=255) tgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATc > 2:694516‑M1/3‑90 (MQ=255) gAAAGGTGCCAGTTTTTGCACTCCCTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCCCTCCCGGTTTGGGATc < 1:93776/90‑1 (MQ=255) aggtcccagtgagtgcgaaaactggcaccttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCCCTCCCGGTTTGCGATCTgg < 2:944792‑M2/59‑1 (MQ=255) AGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGc > 1:323464‑M1/1‑83 (MQ=255) AGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGc < 2:323464‑M1/83‑1 (MQ=255) AGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTgg < 1:281770‑M1/90‑1 (MQ=255) AGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTgg < 2:371804‑M1/90‑1 (MQ=255) AGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTgg < 2:573886‑M1/90‑1 (MQ=255) GGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt > 2:498215‑M1/1‑90 (MQ=255) TGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgt < 1:76264‑M1/90‑1 (MQ=255) GCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgtg < 2:143302‑M1/90‑1 (MQ=255) tttCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAgg > 2:159045/1‑90 (MQ=255) ttCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGc < 2:237333/90‑1 (MQ=255) ttCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGc < 2:234009/90‑1 (MQ=255) ttCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGc < 2:273660/90‑1 (MQ=255) cactcactGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGaaa < 2:231375/90‑1 (MQ=255) cactGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAt < 1:573886/90‑1 (MQ=255) cactGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAt > 1:388180/1‑90 (MQ=255) ctggcaccttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTc < 1:399699‑M2/80‑1 (MQ=255) ctggcaccttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTc < 1:281727‑M2/80‑1 (MQ=255) ttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTcc > 1:881701‑M2/3‑90 (MQ=255) ttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTcc > 1:955152‑M2/3‑90 (MQ=255) cATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAt < 2:551055/78‑1 (MQ=255) cATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAt > 1:551055/1‑78 (MQ=255) | TTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCC > NZ_CP009273/4229611‑4229787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |