breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	518,791	0	T	G	68.8%	‑2.3 / 10.6	16	G25G (GGT→GGG)	rhsD	rhs element protein RhsD
*	NZ_CP009273	4,101,675	0	G	T	61.5%	‑2.8 / 14.3	13	N156K (AAC→AAA)	yiiQ	YiiQ family protein
*	NZ_CP009273	381,253	0	T	G	58.3%	7.5 / 12.7	12	V189G (GTG→GGG)	tauA	taurine ABC transporter substrate‑binding protein
*	NZ_CP009273	2,254,480	0	A	C	58.3%	7.0 / 12.5	12	V137G (GTG→GGG)	fruA	PTS fructose transporter subunit IIBC
*	NZ_CP009273	3,291,076	0	A	C	58.3%	7.8 / 12.8	12	V141G (GTG→GGG)	yraQ	permease
*	NZ_CP009273	3,175,946	0	C	G	56.0%	12.9 / 32.2	25	A13G (GCA→GGA)	zupT	zinc transporter ZupT
*	NZ_CP009273	832,048	0	T	G	54.5%	8.4 / 13.1	11	V81G (GTC→GGC)	hcxB	hydroxycarboxylate dehydrogenase HcXB
*	NZ_CP009273	108,789	0	T	C	53.8%	5.3 / 12.6	14	S100G (AGC→GGC)	zapD	cell division protein ZapD
*	NZ_CP009273	2,141,214	0	T	G	53.8%	5.3 / 13.6	13	G20G (GGT→GGG)	yegD	molecular chaperone
*	NZ_CP009273	1,571,380	0	A	C	53.3%	7.5 / 16.8	15	V166G (GTA→GGA)	yddB	TonB‑dependent receptor plug domain‑containing protein
*	NZ_CP009273	3,029,116	0	A	C	53.3%	9.5 / 18.3	15	G175G (GGT→GGG)	prfB	peptide chain release factor 2
*	NZ_CP009273	2,852,805	0	T	G	52.2%	19.1 / 23.4	23	V785G (GTT→GGT)	mutS	DNA mismatch repair protein MutS
*	NZ_CP009273	3,659,062	0	C	A	51.8%	30.8 / 54.5	27	A37S (GCG→TCG)	gadX	acid resistance transcriptional activator GadX
*	NZ_CP009273	2,860,603	0	A	T	38.7%	20.2 / 12.1	31	V103E (GTA→GAA)	rpoS	RNA polymerase sigma factor RpoS
*	NZ_CP009273	341,039	0	C	A	34.2%	88.2 / 22.7	41	intergenic (+337/‑76)	BW25113_RS01680/BW25113_RS01685	hypothetical protein/hypothetical protein