mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356979 | 357574 | 596 | 2 [1] | [1] 2 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 418990 | 419013 | 24 | 2 [1] | [1] 3 | malZ | maltodextrin glucosidase |
| * | * | ÷ | NZ_CP009273 | 428505 | 428553 | 49 | 3 [1] | [1] 2 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 447281 | 447291 | 11 | 14 [1] | [0] 2 | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide MFS transporter AmpG |
| * | * | ÷ | NZ_CP009273 | 576165 | 576198 | 34 | 2 [1] | [1] 5 | ylcI/nohD | YlcI/YnfO family protein/DNA‑packaging protein |
| * | * | ÷ | NZ_CP009273 | 877102 | 877132 | 31 | 2 [1] | [1] 2 | dacC | serine‑type D‑Ala‑D‑Ala carboxypeptidase |
| * | * | ÷ | NZ_CP009273 | 903003 | 903053 | 51 | 3 [1] | [1] 3 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 931244 | 931254 | 11 | 3 [0] | [1] 9 | ftsK | DNA translocase FtsK |
| * | * | ÷ | NZ_CP009273 | 1098844 | 1098874 | 31 | 2 [1] | [0] 2 | csgD/csgB | biofilm master transcriptional regulator CsgD/curli minor subunit CsgB |
| * | * | ÷ | NZ_CP009273 | 1193242 | 1193305 | 64 | 2 [1] | [1] 2 | BW25113_RS05920 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1275068 | 1275078 | 11 | 4 [0] | [1] 3 | narK/narG | nitrate transporter NarK/nitrate reductase subunit alpha |
| * | * | ÷ | NZ_CP009273 | 1403248 | 1403267 | 20 | 2 [1] | [0] 2 | zntB | zinc transporter ZntB |
| * | * | ÷ | NZ_CP009273 | 1417951 | 1417977 | 27 | 2 [0] | [0] 2 | BW25113_RS26130/trkG | hypothetical protein/Trk system potassium transporter TrkG |
| * | * | ÷ | NZ_CP009273 | 1524311 | 1524324 | 14 | 4 [1] | [1] 2 | BW25113_RS07645/BW25113_RS26145 | RHS repeat protein/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2100372 | 2100381 | 10 | 2 [1] | [1] 3 | wzy | O16 family O‑antigen polymerase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 52 (2.020) | 31/164 | 0.0 | 65.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 28 (1.090) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 15 (0.590) | 7/162 | 1.1 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 41 (1.600) | 22/164 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 4532499 = | 6 (0.230) | 10 (0.440) | 9/146 | 0.8 | 63.8% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 6 (0.260) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 6 (0.230) | 10 (0.440) | 10/146 | 0.7 | 63.8% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 6 (0.260) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||