mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 648 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,393,722 | 0 | T | G | 60.0% | ‑2.3 / 11.1 | 15 | G202G (GGT→GGG) | hflC | protease modulator HflC |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 58.8% | 0.1 / 34.6 | 34 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 57.6% | 13.9 / 30.4 | 33 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,679,381 | 0 | A | C | 57.1% | ‑5.0 / 20.5 | 21 | G1051G (GGT→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 3,806,632 | 0 | C | T | 57.1% | 8.0 / 26.3 | 28 | S181L (TCG→TTG) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 112,300 | 0 | A | C | 56.2% | ‑6.2 / 14.7 | 16 | G429G (GGT→GGG) | gspE | type II secretion system protein GspE |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 56.2% | ‑5.6 / 14.8 | 16 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 55.6% | ‑1.0 / 29.0 | 27 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 55.6% | 0.5 / 28.3 | 27 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 737,562 | 0 | A | C | 55.6% | ‑5.6 / 17.9 | 18 | S151A (TCT→GCT) | dtpD | dipeptide permease DtpD |
| * | NZ_CP009273 | 883,470 | 0 | T | G | 55.6% | ‑5.9 / 17.9 | 18 | intergenic (+55/+120) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 55.6% | ‑3.6 / 27.9 | 27 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 3,699,021 | 0 | T | C | 55.6% | ‑1.8 / 17.6 | 18 | I44V (ATC→GTC) | dppB | dipeptide ABC transporter permease DppB |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 54.5% | ‑4.1 / 24.4 | 22 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 54.5% | 7.3 / 33.6 | 33 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,806,452 | 0 | T | C | 54.2% | ‑3.7 / 26.2 | 24 | L121P (CTC→CCC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 53.8% | ‑5.0 / 12.3 | 13 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 53.8% | ‑5.0 / 12.3 | 13 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 53.8% | ‑5.3 / 12.0 | 13 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 53.8% | ‑2.9 / 11.5 | 13 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |