| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3423234 = | 45 (1.540) | 3 (0.120) | 3/148 | 2.0 | 8.6% | coding (149/258 nt) | yrdB | DUF1488 domain‑containing protein |
| ? | NZ_CP009273 | 3423267 = | 25 (0.990) | coding (116/258 nt) | yrdB | DUF1488 domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3423331‑3423234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatacgccagaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTCC > NZ_CP009273/3423267‑3423353 AAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGAT < 1:248077/90‑1AAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGAT < 2:319243/90‑1AAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGAT < 2:304533/90‑1AAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGAT < 1:822328/90‑1 ATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATAC > 1:325393/1‑90 TGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGGGATACG > 2:238187/1‑90 TGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACG > 2:420788/1‑90 TGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCC < 1:651049/90‑1 GTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCA > 2:147997/1‑90 TATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAG < 1:19542/90‑1 TATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAG < 2:509034/90‑1 TATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGACTCTCGCCAGAGATCGCGCATGTC < 2:494431/90‑1 GACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGAT > 1:684687/1‑49 GACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGAT < 2:684687/49‑1 CTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGC < 1:491381/90‑1 CGTATCGCTTTACTGGAGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATCCCATTCACGAGAGCGGGAAAACATACACA < 2:38746/90‑1 GATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCC > 2:359817/1‑90 ATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCA > 1:440176/1‑90 AGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTCC > 2:792752/1‑90 AAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3423331‑3423234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatacgccagaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTCC > NZ_CP009273/3423267‑3423353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |