| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3423234 = | 45 (1.540) | 3 (0.120) | 3/148 | 2.0 | 8.6% | coding (149/258 nt) | yrdB | DUF1488 domain‑containing protein |
| ? | NZ_CP009273 | 3423267 = | 25 (0.990) | coding (116/258 nt) | yrdB | DUF1488 domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTCCCTG > NZ_CP009273/3423181‑3423356 | ccGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGActct > 2:220741/1‑90 (MQ=255)ccGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGActct > 1:525338/1‑90 (MQ=255) gctctcgtgaatggtatgcaactgacatgcgcgatctctggcgagagTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCag < 1:491381‑M1/43‑1 (MQ=255) ggTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCgcgc > 2:546073/1‑90 (MQ=255) gTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCa > 1:148409/1‑90 (MQ=255) gTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCa < 1:634430/90‑1 (MQ=255) ccAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGt > 1:749514/1‑90 (MQ=255) tatgcaactgacatgcgcgatctctggcgagagtctggcgtatcgctttactggagatacgccagaCTCTCGCCAGAGATCGCGCATGTc < 2:494431‑M2/24‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:799385/90‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:681720/90‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:553467/90‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:354820/90‑1 (MQ=255) gATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGtt > 1:269711/1‑90 (MQ=255) aTGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTg > 1:82666/1‑90 (MQ=255) cTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCAt < 1:334775/90‑1 (MQ=255) cTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCAt < 1:153167/90‑1 (MQ=255) gacatgcgcgatctctggcgagagTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATa < 2:494431‑M1/66‑1 (MQ=255) gACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATAc < 1:33432/90‑1 (MQ=255) aaaCTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTc > 1:689456/1‑90 (MQ=255) aaaCTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTc > 1:38938/1‑90 (MQ=255) cGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACgag > 1:147997/1‑90 (MQ=255) gCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACgaga < 2:736100/90‑1 (MQ=255) ctggcgagagtctggcgtatcgctttactggagatacgccagaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGc < 1:491381‑M2/47‑1 (MQ=255) aCCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCgg > 1:650611/1‑90 (MQ=255) gTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATAc > 1:746012/1‑69 (MQ=255) gTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATAc < 2:746012/69‑1 (MQ=255) CTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATa < 2:509034‑M1/90‑1 (MQ=255) CTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATa < 1:19542‑M1/90‑1 (MQ=255) TGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATac > 2:147997‑M1/1‑90 (MQ=255) GGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATaca < 1:651049‑M1/90‑1 (MQ=255) cgtatcgctttactggagatacgccagaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATCCCATTCACGAGAGCGGGAAAACATAcaca < 2:38746‑M2/62‑1 (MQ=255) CGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATAcaca > 2:420788‑M1/1‑90 (MQ=255) CGTATCCCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATAcaca > 2:238187‑M1/1‑90 (MQ=255) GTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACAt > 1:325393‑M1/1‑90 (MQ=255) ATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc > 1:684687‑M1/1‑49 (MQ=255) ATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:684687‑M1/49‑1 (MQ=255) ATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACAttt < 1:248077‑M1/90‑1 (MQ=255) ATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACAttt < 2:319243‑M1/90‑1 (MQ=255) ATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACAttt < 2:304533‑M1/90‑1 (MQ=255) ATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACAttt < 1:822328‑M1/90‑1 (MQ=255) aGTAAAGCGAATAGCCGGACGCTCGCCAGAGATCGCGCATGTCAGTTTCATGCCATTCACGAGAGCGGGAAAACATACGCATTTTTTAtt < 1:113667/90‑1 (MQ=255) aaGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCg > 1:636266/1‑90 (MQ=255) aaGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCg > 1:693907/1‑90 (MQ=255) gatacgccagaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTccc > 2:359817‑M2/12‑90 (MQ=255) atacgccagaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCa > 1:440176‑M2/11‑90 (MQ=255) agaCTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTcc > 2:792752‑M2/4‑90 (MQ=255) ctctCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTCCCTg > 1:428138/1‑90 (MQ=255) | CCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGGGAAAACATACACATTTTTTATTCTCGTCCCACTCTTCCCTG > NZ_CP009273/3423181‑3423356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |