| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3423234 = | 45 (1.540) | 3 (0.120) | 3/148 | 2.0 | 8.6% | coding (149/258 nt) | yrdB | DUF1488 domain‑containing protein |
| ? | NZ_CP009273 | 3423267 = | 25 (0.990) | coding (116/258 nt) | yrdB | DUF1488 domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTGATCATCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGG > NZ_CP009273/3423145‑3423315 | cTTGATCATCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGGCCCAGCGATGCTGACGAAAACTCGCTAACCACTGtt < 1:66344/90‑1 (MQ=255) tGATCATCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCt > 2:32400/1‑90 (MQ=255) tGATCATCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCt < 1:270753/90‑1 (MQ=255) ggaagagtgggacgagaataaaaaatgtgtatgttttcccgctctcgtgaatggtatgcaactgacatgcgcgatctctggcgagagTCt > 2:792752‑M1/88‑90 (MQ=255) gATCCTCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTg < 1:177763/90‑1 (MQ=255) catcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCg < 2:264211/90‑1 (MQ=255) catcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCg < 2:168605/90‑1 (MQ=255) catcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCg < 1:622312/90‑1 (MQ=255) tcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTa > 2:133450/1‑90 (MQ=255) tcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTa < 2:472749/90‑1 (MQ=255) tcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTa > 1:8975/1‑90 (MQ=255) tcTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTa > 2:66047/1‑90 (MQ=255) tgggacgagaataaaaaatgtgtatgttttcccgctctcgtgaatggtatgcaactgacatgcgcgatctctggcgagagTCTGGCGTAt > 1:440176‑M1/81‑90 (MQ=255) ttCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTAtc < 2:512372/90‑1 (MQ=255) gggacgagaataaaaaatgtgtatgttttcccgctctcgtgaatggtatgcaactgacatgcgcgatctctggcgagagTCTGGCGTAtc > 2:359817‑M1/80‑90 (MQ=255) gTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTaa > 1:599783/1‑90 (MQ=255) gAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGAt < 1:35524/90‑1 (MQ=255) gAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGAt < 2:538522/90‑1 (MQ=255) tgtgtatgttttcccgctctcgtgaatgggatgcaactgacatgcgcgatctctggcgagagTCTGGCGTATCTCCAGTAAAGCGATACg < 2:38746‑M1/28‑1 (MQ=255) tAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGc > 2:575860/1‑90 (MQ=255) aaGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGcc > 1:190049/1‑90 (MQ=255) ttCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCa > 2:204036/1‑86 (MQ=255) ttCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCa < 1:204036/86‑1 (MQ=255) ttCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCa > 2:126652/1‑86 (MQ=255) ttCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCa < 1:126652/86‑1 (MQ=255) ccGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGActct > 2:220741/1‑90 (MQ=255) ccGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGActct > 1:525338/1‑90 (MQ=255) gctctcgtgaatggtatgcaactgacatgcgcgatctctggcgagagTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCag < 1:491381‑M1/43‑1 (MQ=255) ggTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCgcgc > 2:546073/1‑90 (MQ=255) gTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCa > 1:148409/1‑90 (MQ=255) gTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCa < 1:634430/90‑1 (MQ=255) ccAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGt > 1:749514/1‑90 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:354820/90‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:553467/90‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:681720/90‑1 (MQ=255) cAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTc < 2:799385/90‑1 (MQ=255) gATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGtt > 1:269711/1‑90 (MQ=255) aTGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTa < 1:420173/37‑1 (MQ=255) aTGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTa > 2:420173/1‑37 (MQ=255) aTGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTg > 1:82666/1‑90 (MQ=255) cTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCAt < 1:334775/90‑1 (MQ=255) cTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCAt < 1:153167/90‑1 (MQ=255) gacatgcgcgatctctggcgagagTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATa < 2:494431‑M1/66‑1 (MQ=255) gACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATAc < 1:33432/90‑1 (MQ=255) aaaCTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTc > 1:689456/1‑90 (MQ=255) aaaCTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTc > 1:38938/1‑90 (MQ=255) cGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACgag > 1:147997/1‑90 (MQ=255) gCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACgaga < 2:736100/90‑1 (MQ=255) aCCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCgg > 1:650611/1‑90 (MQ=255) gTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATAc > 1:746012/1‑69 (MQ=255) gTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATAc < 2:746012/69‑1 (MQ=255) | CTTGATCATCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCACTGTTCTGGCGTATCTCCAGTAAAGCGATACGCCAGACTCTCGCCAGAGATCGCGCATGTCAGTTGCATACCATTCACGAGAGCGG > NZ_CP009273/3423145‑3423315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |