New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1205074	0 (0.000)	6 (0.710)	4/136	0.5	44.4%	coding (41/540 nt)	BW25113_RS06005	phage tail protein
	?	NZ_CP009273	2465376 =	15 (1.780)					coding (283/636 nt)	BW25113_RS12285	hypothetical protein

CGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCT‑CCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/1204979‑1205074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttct‑cccaaaccaaGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCC  >  NZ_CP009273/2465376‑2465407                                                                                                                                   CGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCT‑CCCA                                        >  1:144156/1‑90                             TGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCT‑CCCAAACCAAGGTTTTCGAGAGCCGTTTGCAC            <  1:215075/90‑1                                CGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCCAAACCAAGGTTTTCGAGAGCCGTTTGCACag          >  2:266508/1‑88                                                                         ATGCAGAGCCTTCT‑CCCAAACCAAGGTTTTCGAGAGCCGTT                 >  1:232982/1‑41                                                                         ATGCAGAGCCTTCT‑CCCAAACCAAGGTTTTCGAGAGCCGTT                 <  2:232982/41‑1                                                                             AGAGCCTTCT‑CCCAAACCAAGGTTTTCGAGAGCCGTTTGCAC            <  1:63840/42‑1                                                                             AGAGCCTTCT‑CCCAAACCAAGGTTTTCGAGAGCCGTTTGCAC            >  2:63840/1‑42                                                                                            AACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCC  <  1:144335/38‑1                                                                                            AACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCC  >  2:144335/1‑38                                                                                                                                   CGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCT‑CCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/1204979‑1205074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttct‑cccaaaccaaGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCC  >  NZ_CP009273/2465376‑2465407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.