| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4278944 = | 30 (1.290) | 3 (0.140) | 3/152 | 1.8 | 10.8% | coding (1253/1437 nt) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit |
| ? | NZ_CP009273 | 4279020 = | 23 (1.110) | coding (1329/1437 nt) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATGTTCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/4279035‑4278944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAA > NZ_CP009273/4279020‑4279108 CATGTTCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAG < 2:122669/90‑1 ATGTTCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGG > 1:151323/1‑90 ATGTTCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGATGATGCCTTTGGTCGCCAGCAGG > 1:226858/1‑90 TGTTCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGGC < 2:262627/90‑1 TCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGGCCAT < 1:208438/90‑1 CTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAG < 2:40407/90‑1 TCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACT < 2:86590/90‑1 CCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGC < 1:406709/90‑1 CCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGC < 1:637674/90‑1 CCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGC < 2:79040/90‑1 AGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCAC > 2:174997/1‑90 CCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAA > 1:639317/1‑90 CATGTTCAGGCCAATGGCCTGCTGGGCTTTCTCTTTGGTTGAGATATCCGGGATCTGGATTTCATGGGTGATGCCTTTGGTCGCCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/4279035‑4278944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAA > NZ_CP009273/4279020‑4279108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |