| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4278944 = | 30 (1.290) | 3 (0.140) | 3/152 | 1.8 | 10.8% | coding (1253/1437 nt) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit |
| ? | NZ_CP009273 | 4279020 = | 23 (1.110) | coding (1329/1437 nt) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAA > NZ_CP009273/4278933‑4279108 | tcaggccaatggcctgctgggctttctctttggttgagatatccgggatctggatttcatgggtgatgcctttggtcgccagcaggcCAt < 1:208438‑M2/3‑1 (MQ=255)cAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCAt < 2:188767/90‑1 (MQ=255) aaaCTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCAtt > 1:136985/1‑90 (MQ=255) aaCTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTg < 1:349053/90‑1 (MQ=255) tGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGcc < 2:113492/90‑1 (MQ=255) ggCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCt < 2:628975/90‑1 (MQ=255) atgGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGa < 1:208438‑M1/87‑1 (MQ=255) GCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACa < 2:262627‑M1/90‑1 (MQ=255) CCTGCTGGCGACCAAAGGCATCATCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACAt > 1:226858‑M1/1‑90 (MQ=255) CCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACAt > 1:151323‑M1/1‑90 (MQ=255) CTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATg < 2:122669‑M1/90‑1 (MQ=255) cGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACaaa < 2:4334/90‑1 (MQ=255) ctctttggttgagatatccgggatctggatttcatgggtgatgcctttggtcgccagcaggcCATTGGCCTGAACATGGAACAAATCAAg < 2:40407‑M2/28‑1 (MQ=255) cATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCga < 1:455408/90‑1 (MQ=255) aTGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAgg > 1:252203/1‑90 (MQ=255) aTGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAgg > 2:637674/1‑90 (MQ=255) tccgggatctggatttcatgggtgatgcctttggtcgccagcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACt < 2:86590‑M2/44‑1 (MQ=255) tCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCCGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTtca > 2:72959/1‑90 (MQ=255) ccAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTtcat > 1:419733/1‑90 (MQ=255) ccAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTtcat > 1:387590/1‑90 (MQ=255) aGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTtcatca > 1:443445/1‑90 (MQ=255) gATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGcc > 2:417041/1‑47 (MQ=255) gATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGcc < 1:417041/47‑1 (MQ=255) gATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCaa > 2:237721/1‑90 (MQ=255) gATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTg < 1:127730/90‑1 (MQ=255) aCCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAg < 2:537349/90‑1 (MQ=255) aCCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAg < 1:131562/90‑1 (MQ=255) aCCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAg < 1:65310/90‑1 (MQ=255) cAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTg > 2:482757/1‑90 (MQ=255) aaaGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTgg > 1:538220/1‑90 (MQ=255) aaGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAAc > 1:250430/1‑90 (MQ=255) ccagcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGc < 1:637674‑M2/81‑1 (MQ=255) ccagcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGc < 1:406709‑M2/81‑1 (MQ=255) ccagcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGc < 2:79040‑M2/81‑1 (MQ=255) agcaggcCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCAc > 2:174997‑M2/8‑90 (MQ=255) cCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTaaaa > 1:639317‑M2/2‑90 (MQ=255) | CAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACATGGAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAA > NZ_CP009273/4278933‑4279108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |