| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4278944 = | 30 (1.290) | 3 (0.140) | 3/152 | 1.8 | 10.8% | coding (1253/1437 nt) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit |
| ? | NZ_CP009273 | 4279020 = | 23 (1.110) | coding (1329/1437 nt) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGCATTCATATGCACGCACCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACA > NZ_CP009273/4278855‑4279033 | ttttacgtgcctgttcttcccactgcgggatcaccgttttgatgaagtcctgcttctcggccttgatttgttccatgttcaggccaatgg > 1:639317‑M1/90‑90 (MQ=255) gtgcctgttcttcccactgcgggatcaccgttttgatgaagtcctgcttctcggccttgatttgttccatgttcaggccaatgGCctgct > 2:174997‑M1/84‑90 (MQ=255) gcctgttcttcccactgcgggatcaccgttttgatgaagtcctgcttctcggccttgatttgttccatgttcaggccaatgGCCTGCTgg < 2:79040‑M1/9‑1 (MQ=255) gcctgttcttcccactgcgggatcaccgttttgatgaagtcctgcttctcggccttgatttgttccatgttcaggccaatgGCCTGCTgg < 1:637674‑M1/9‑1 (MQ=255) gcctgttcttcccactgcgggatcaccgttttgatgaagtcctgcttctcggccttgatttgttccatgttcaggccaatgGCCTGCTgg < 1:406709‑M1/9‑1 (MQ=255) atGCACGCACCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCGCGCACCAAACGGGCGCGCCTGgcggcg > 1:511896/1‑90 (MQ=255) atGCACGCACCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCg > 1:188767/1‑90 (MQ=255) gcacgcacCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGAc > 2:422246/1‑90 (MQ=255) cgcacCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCaa > 2:612877/1‑90 (MQ=255) gcacCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCaaa > 2:470048/1‑90 (MQ=255) cacCGGAAGAAGGTTTACGGATGCTCGGTACGTCGATGGATAAAGCGGCGGATGCACACACCAAAACGGCGGGCCGGCTGGCGTCCaaaa > 1:549855/1‑89 (MQ=255) cacCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAg > 2:430886/1‑90 (MQ=255) cacCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACAGGCGCGCCTGCTGGCGACCCAAg > 1:291663/1‑90 (MQ=255) ccGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGc > 2:381962/1‑90 (MQ=255) cGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAACCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGTCa < 1:470048/90‑1 (MQ=255) gaagaaGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATc < 2:3346/90‑1 (MQ=255) gaagGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCAcc < 1:261893/90‑1 (MQ=255) agGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCa > 2:178469/1‑90 (MQ=255) ttACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGaa < 1:430886/90‑1 (MQ=255) ttACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGaa < 1:633964/90‑1 (MQ=255) gTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCgg < 2:410794/90‑1 (MQ=255) tACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGa < 2:317853/90‑1 (MQ=255) agtcctgcttctcggccttgatttgttccatgttcaggccaatgGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGa < 2:86590‑M1/46‑1 (MQ=255) gCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATAtc < 2:89511/90‑1 (MQ=255) gCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATAtc < 2:328393/90‑1 (MQ=255) gATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATAtctc < 1:383966/90‑1 (MQ=255) cttgatttgttccatgttcaggccaatgGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAagag < 2:40407‑M1/62‑1 (MQ=255) gcggATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCATCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGaaa > 2:226858/1‑90 (MQ=255) gcggATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGaaa > 2:151323/1‑90 (MQ=255) gcacccacCAAACTGGCGCGCCTTCTGGCGACCAAAGGCTTCACCCATGAAAACCAGATCCCGGATATCTCAACCAAAAAAAAAACCcag > 1:209748/1‑90 (MQ=255) cacgcacCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCcagc < 2:78943/90‑1 (MQ=255) cgcacCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCcagcag < 2:627530/90‑1 (MQ=255) cAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCAt < 2:188767/90‑1 (MQ=255) aaaCTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCAtt > 1:136985/1‑90 (MQ=255) aaCTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTg < 1:349053/90‑1 (MQ=255) tGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGcc < 2:113492/90‑1 (MQ=255) ggCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCt < 2:628975/90‑1 (MQ=255) atgGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGa < 1:208438‑M1/87‑1 (MQ=255) GCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACa < 2:262627‑M1/90‑1 (MQ=255) | CGGCATTCATATGCACGCACCGGAAGAAGGTTTACGGATGCTCGGTACGGCGATGGATAAAGCGGCGGATGCACGCACCAAACTGGCGCGCCTGCTGGCGACCAAAGGCATCACCCATGAAATCCAGATCCCGGATATCTCAACCAAAGAGAAAGCCCAGCAGGCCATTGGCCTGAACA > NZ_CP009273/4278855‑4279033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |