mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 822,963 | 0 | T | G | 61.5% | ‑2.6 / 12.0 | 13 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,383,577 | 0 | T | G | 58.3% | 9.0 / 11.1 | 12 | G233G (GGT→GGG) | aaeR | HTH‑type transcriptional activator AaeR |
| * | NZ_CP009273 | 115,883 | 0 | C | T | 54.5% | 2.8 / 11.5 | 11 | S39F (TCT→TTT) | ampE | beta‑lactamase regulator AmpE |
| * | NZ_CP009273 | 3,569,316 | 0 | A | C | 54.5% | 7.0 / 12.2 | 11 | V369G (GTG→GGG) | gntU | gluconate transporter |
| * | NZ_CP009273 | 4,604,966 | 0 | G | C | 54.5% | 10.0 / 13.6 | 11 | A132G (GCG→GGG) | yjjW | YjjW family glycine radical enzyme activase |
| * | NZ_CP009273 | 2,526,985 | 0 | A | C | 53.8% | 7.1 / 12.1 | 13 | intergenic (+246/‑138) | cysK/ptsH | cysteine synthase A/phosphocarrier protein Hpr |
| * | NZ_CP009273 | 4,186,017 | 0 | G | T | 53.3% | 13.5 / 27.0 | 15 | T4K (ACA→AAA) | thiC | phosphomethylpyrimidine synthase ThiC |
| * | NZ_CP009273 | 2,921,519 | 0 | A | T | 52.9% | 1.4 / 15.0 | 17 | intergenic (+488/‑69) | ppnN/sdaC | nucleotide 5'‑monophosphate nucleosidase PpnN/HAAAP family serine/threonine permease SdaC |
| * | NZ_CP009273 | 4,431,979 | 0 | A | T | 37.1% | 48.6 / 11.7 | 35 | D5E (GAT→GAA) | msrA | peptide‑methionine (S)‑S‑oxide reductase MsrA |