| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3333655 | 9 (0.410) | 3 (0.150) | 3/152 | 1.6 | 19.3% | coding (22/978 nt) | yrbG | calcium/sodium antiporter |
| ? | NZ_CP009273 | = 3333682 | 17 (0.870) | coding (49/978 nt) | yrbG | calcium/sodium antiporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3333558‑3333655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcactgtAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTC < NZ_CP009273/3333682‑3333601 TCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTAC < 2:346667/90‑1 AAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGG < 1:54206/90‑1 AAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGC > 2:243503/1‑90 AATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCA < 2:186154/90‑1 AATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCA < 2:377061/90‑1 cTTAAGCTTCCGTTACGGTTTTCTCAAAATCTTCAGCGGACCGGCGAGTATTCCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCAC < 1:104945/89‑1 ATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCAC < 2:400964/90‑1 GAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTA > 1:382386/1‑90 CGTTAGATGCTTTTAGCTACGGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTC > 1:343496/1‑90 ACGGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGG > 2:305824/1‑90 GGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTC < 1:582718/90‑1 TCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3333558‑3333655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcactgtAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTC < NZ_CP009273/3333682‑3333601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |