| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3333655 | 9 (0.410) | 3 (0.150) | 3/152 | 1.6 | 19.3% | coding (22/978 nt) | yrbG | calcium/sodium antiporter |
| ? | NZ_CP009273 | = 3333682 | 17 (0.870) | coding (49/978 nt) | yrbG | calcium/sodium antiporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATGACGGTGGTCA > NZ_CP009273/3333601‑3333769 | gACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTacagtgcc < 1:582718‑M2/90‑9 (MQ=255) ccGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTacagtgccgt > 2:305824‑M2/1‑80 (MQ=255) taCCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGtt > 1:39968/1‑90 (MQ=255) gaaAGGACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTacagtgccgtagctaaaagcatctaacg > 1:343496‑M2/1‑62 (MQ=255) ggACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCt > 1:253125/1‑90 (MQ=255) tAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTacagtgccgtagctaaaagcatctaacgtcctttcttc > 1:382386‑M2/1‑52 (MQ=255) tGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGcc > 1:204968/1‑90 (MQ=255) tttAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAAc > 2:355240/1‑90 (MQ=255) cGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCa > 1:333672/1‑90 (MQ=255) aaTTGTTGGTTTACTTTTGGTCTTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCt > 2:247144/1‑90 (MQ=255) ggTTTCCTTTTGGTCGTTTACAGTGCCGCCCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGatcatc < 2:405062/90‑1 (MQ=255) ggTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGatcatc > 2:381164/1‑90 (MQ=255) tttttGGTCGTTTACAGTCCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATg < 2:549673/89‑1 (MQ=255) ttttGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATGa > 2:611185/1‑90 (MQ=255) tGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATGACgg < 2:333672/90‑1 (MQ=255) tCGTTTACAGTGCCGCCCGCTTGGTTTTTGCCGCGTTTATTTTTTGCCGAACTTTTGGCATCCCGCCGCTGATCATCGGCATGACggtgg < 1:319464/90‑1 (MQ=255) tCGTTTACAGTGCCGCCCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGACCCTTTGGCATCCCGCCGCTGATCATCGGCATGACggtgg < 2:253125/90‑1 (MQ=255) gTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATGACGGTGGTc > 2:372871/1‑90 (MQ=255) tttACAGTGCCGCCCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATGACGGTGGTCa < 1:354257/90‑1 (MQ=255) tttACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTTTTCTTTGCCGAACTTTTGGCATCCCGCCGCTGATCATCGGCATGACGGTGGTCa < 1:577622/90‑1 (MQ=255) tttAAAGTGCCGCCCGCCGGGTTTTTGCCGCGTCTATTCTTTGCCGACCCTTTGGCATCCCGCCGCTGATCATCGGCATGACGGTGGTCa < 2:204968/90‑1 (MQ=255) | GACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTTAATTGTTGGTTTACTTTTGGTCGTTTACAGTGCCGACCGCCTGGTTTTTGCCGCGTCTATTCTTTGCCGAACCTTTGGCATCCCGCCGCTGATCATCGGCATGACGGTGGTCA > NZ_CP009273/3333601‑3333769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |