Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NZ_CP009273 | 3,390,478 | Δ45 bp | coding (633‑677/1470 nt) | rng ← | ribonuclease G |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 3390478 | 3390522 | 45 | 12 [0] | [0] 14 | rng | ribonuclease G |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 3390477 | 0 (0.000) | 11 (1.090) | 9/152 | 0.2 | 100% | coding (678/1470 nt) | rng | ribonuclease G |
? | NZ_CP009273 | 3390523 = | 0 (0.000) | coding (632/1470 nt) | rng | ribonuclease G |
TGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTGCGCCAGCGCCAGTTCGCCGTACAGCTGATAACGGGTCTGCGGGCGTTTTTTACGCT > NZ_CP009273/3390393‑3390562 | tgTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgta > 1:297448‑M1/1‑85 (MQ=255) gTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtac < 1:226788‑M1/90‑7 (MQ=255) cGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgat > 2:301209‑M1/1‑77 (MQ=255) aTGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgg > 2:195154‑M1/1‑72 (MQ=255) ggTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcg < 1:301209‑M1/90‑30 (MQ=255) aaCTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtac > 1:153722‑M1/1‑57 (MQ=255) aaCTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtac < 2:153722‑M1/63‑7 (MQ=255) cAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttac < 1:279694‑M1/90‑38 (MQ=255) cAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttac < 2:122139‑M1/90‑38 (MQ=255) aGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttacgc < 1:186564‑M1/90‑40 (MQ=255) aaCGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttacgctcc > 2:13210‑M1/1‑48 (MQ=255) gTTCGccgtacagctgataacgggtctgcgggcgttttttacgctccataactttggtccagacgcgtttcagataagcggcatcggagg > 1:140502‑M1/1‑5 (MQ=255) | TGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTGCGCCAGCGCCAGTTCGCCGTACAGCTGATAACGGGTCTGCGGGCGTTTTTTACGCT > NZ_CP009273/3390393‑3390562 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |