Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NZ_CP009273	3,390,478	Δ45 bp	coding (633‑677/1470 nt)	rng ←	ribonuclease G

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3390478	3390522	45	12 [0]	[0] 14	rng	ribonuclease G

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3390477	0 (0.000)	11 (1.090)	9/152	0.2	100%	coding (678/1470 nt)	rng	ribonuclease G
	?	NZ_CP009273	3390523 =	0 (0.000)					coding (632/1470 nt)	rng	ribonuclease G

TGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTGCGCCAGCGCCAGTTCGCCGTACAGCTGATAACGGGTCTGCGGGCGTTTTTTACGCT  >  NZ_CP009273/3390393‑3390562                                                                                     |                                                                                      tgTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgta                                                                                  >  1:297448‑M1/1‑85 (MQ=255)  gTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtac                                                                                 <  1:226788‑M1/90‑7 (MQ=255)         cGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgat                                                                          >  2:301209‑M1/1‑77 (MQ=255)              aTGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgg                                                                     >  2:195154‑M1/1‑72 (MQ=255)                         ggTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcg                                                          <  1:301209‑M1/90‑30 (MQ=255)                             aaCTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtac                                                                                 >  1:153722‑M1/1‑57 (MQ=255)                             aaCTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtac                                                                                 <  2:153722‑M1/63‑7 (MQ=255)                                 cAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttac                                                  <  1:279694‑M1/90‑38 (MQ=255)                                 cAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttac                                                  <  2:122139‑M1/90‑38 (MQ=255)                                   aGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttacgc                                                <  1:186564‑M1/90‑40 (MQ=255)                                      aaCGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGccgtacagctgataacgggtctgcgggcgttttttacgctcc                                             >  2:13210‑M1/1‑48 (MQ=255)                                                                                 gTTCGccgtacagctgataacgggtctgcgggcgttttttacgctccataactttggtccagacgcgtttcagataagcggcatcggagg  >  1:140502‑M1/1‑5 (MQ=255)                                                                                     |                                                                                      TGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTGCGCCAGCGCCAGTTCGCCGTACAGCTGATAACGGGTCTGCGGGCGTTTTTTACGCT  >  NZ_CP009273/3390393‑3390562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑