| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3851553 = | 52 (1.730) | 4 (0.160) | 4/142 | 1.6 | 9.2% | coding (212/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase |
| ? | NZ_CP009273 | 3851602 = | 35 (1.380) | coding (163/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTATTCGCTTTAATTCCGCCTACACCTGTTCACCGGTTTGTACGCCTGCACGGGCCGGACTATTTACCGGTATCTACGCTAACCAGTCCGGCCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3851650‑3851553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGTATTCAGC > NZ_CP009273/3851602‑3851687 GGTATTCGCTTTAATTCCGCCTACACCTGTTCACCGGTTTGTACGCCTGCACGGGCCGGACTATTTACCGGTATCTACGCTAACCAGTCC > 2:557001/1‑90 TATTCGCTTTAATTCCGCCTACACCTGTTCACCGGTTTGTACGCCTGCACGGGCCGGACTATTTACCGGTATCTACGCTAACCAGTCCGG < 1:206801/90‑1 TTCGCTTTAATTCCGCCTACACCTGTTCACCGGTTTGTACGCCTGCACGGGCCGGACTATTTACCGGTATCTACGCTAACCAGTCCGGCC < 1:801792/90‑1 CCTACACCTGTTCACCGGTTTGTACGCCTGCACGGGCCGGACTATTTACCGGTATCTACGCTAACCAGTCCGGCCCGTGCAGGCGTACAA < 2:626694/90‑1 TGTACGCCTGCGCGGGCCGGACTATTTACCGGGATCTACGCTAACCAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGC < 1:266582/90‑1 GACTATTTACCGGTATCTACGCTAACCAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCT > 2:155876/1‑90 CGGTATCTACGCTAACCAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCA > 2:453245/1‑90 GTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCG > 2:219227/1‑90 GTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCG > 2:229560/1‑90 GTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCG > 2:520544/1‑90 TCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGT > 2:492517/1‑90 CGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGTATTCAGC < 1:453245/90‑1 GGTATTCGCTTTAATTCCGCCTACACCTGTTCACCGGTTTGTACGCCTGCACGGGCCGGACTATTTACCGGTATCTACGCTAACCAGTCCGGCCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3851650‑3851553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGTATTCAGC > NZ_CP009273/3851602‑3851687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |