| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3851553 = | 52 (1.730) | 4 (0.160) | 4/142 | 1.6 | 9.2% | coding (212/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase |
| ? | NZ_CP009273 | 3851602 = | 35 (1.380) | coding (163/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGTATTCAGC > NZ_CP009273/3851522‑3851687 | gcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATCCCGGTAAATAGTCCGGCCCGCGCAGGCGTACa < 1:266582‑M1/59‑1 (MQ=255)gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa > 1:801690/1‑90 (MQ=255)gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa > 2:690207/1‑90 (MQ=255) cctacacctgttcaccggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACaa < 2:626694‑M2/11‑1 (MQ=255) aTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa < 2:157900/90‑1 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa > 2:84153/1‑90 (MQ=255) gTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCCGGCGTACAAAc > 1:2429/1‑90 (MQ=255) gTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAc > 2:267564/1‑90 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg > 2:443245/1‑90 (MQ=255) tttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCgg < 1:429079/90‑1 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc < 1:817519/90‑1 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc < 1:685170/90‑1 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 2:80442/1‑90 (MQ=255) cgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtgt < 1:514564/90‑1 (MQ=255) cgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtgt < 2:46939/90‑1 (MQ=255) ttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAgg < 2:626694‑M1/79‑1 (MQ=255) tgtacgcctgcgcgggccggactatttaccgggatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:266582‑M2/31‑1 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:443245/90‑1 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:323286/90‑1 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:321075/90‑1 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa < 1:690207/90‑1 (MQ=255) GGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa < 1:801792‑M1/90‑1 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa < 1:206801‑M1/90‑1 (MQ=255) GGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATAcc > 2:557001‑M1/1‑90 (MQ=255) gactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCt > 2:155876‑M2/41‑90 (MQ=255) ggTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:297144/1‑90 (MQ=255) cggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCa > 2:453245‑M2/31‑90 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg < 2:801792/90‑1 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg < 1:626694/90‑1 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGa < 1:765197/90‑1 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGa < 1:267564/90‑1 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGa < 1:669101/90‑1 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGa < 2:401344/90‑1 (MQ=255) gATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt > 2:238533/1‑90 (MQ=255) gATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt > 2:419123/1‑90 (MQ=255) aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:327285/90‑1 (MQ=255) cGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCaa > 2:464399/1‑90 (MQ=255) cGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCaa > 2:558734/1‑90 (MQ=255) cGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCaa > 2:328859/1‑90 (MQ=255) ggTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc < 2:115331/41‑1 (MQ=255) ggTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc > 1:115331/1‑41 (MQ=255) gTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAata < 2:801690/90‑1 (MQ=255) aaaTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATAtt > 1:580469/1‑90 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATAtttt < 2:439628/90‑1 (MQ=255) gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCg > 2:520544‑M2/13‑90 (MQ=255) gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCg > 2:229560‑M2/13‑90 (MQ=255) gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCg > 2:219227‑M2/13‑90 (MQ=255) tccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGt > 2:492517‑M2/12‑90 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGTATTCAGc < 1:453245‑M2/86‑1 (MQ=255) | GATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCAATATTTTGCGTATTCAGC > NZ_CP009273/3851522‑3851687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |