| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3851553 = | 52 (1.730) | 4 (0.160) | 4/142 | 1.6 | 9.2% | coding (212/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase |
| ? | NZ_CP009273 | 3851602 = | 35 (1.380) | coding (163/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCCGATGTAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAA > NZ_CP009273/3851467‑3851640 | tGCCGATGTAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACg > 1:738672/1‑90 (MQ=255)tGCCGATGTAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACg < 1:484150/90‑1 (MQ=255)gctgaatacgcaaaatattgatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg < 1:453245‑M1/4‑1 (MQ=255) acgcaaaatattgatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGa > 2:492517‑M1/80‑90 (MQ=255) tAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGAc < 2:827863/90‑1 (MQ=255) tAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGAc < 2:825046/90‑1 (MQ=255) tAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGAc < 1:803055/90‑1 (MQ=255) tAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGAc < 2:377129/90‑1 (MQ=255) tAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGAc < 1:466272/90‑1 (MQ=255) cgcaaaatattgatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGAc > 2:520544‑M1/79‑90 (MQ=255) cgcaaaatattgatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGAc > 2:229560‑M1/79‑90 (MQ=255) cgcaaaatattgatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGAc > 2:219227‑M1/79‑90 (MQ=255) ggTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGtt < 1:575989/90‑1 (MQ=255) gtgtGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa < 1:31219/90‑1 (MQ=255) gtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc > 1:19732/1‑90 (MQ=255) tgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg > 2:316453/1‑90 (MQ=255) gATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGt > 1:852767/1‑90 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 2:205891/90‑1 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 2:652144/90‑1 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 2:687758/90‑1 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 1:144646/90‑1 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAc < 1:147969/90‑1 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAc < 1:269704/90‑1 (MQ=255) tggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCg > 2:453245‑M1/61‑90 (MQ=255) cTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaaa < 2:129607/90‑1 (MQ=255) aggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTc > 2:155876‑M1/51‑90 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCgg > 1:600326/1‑90 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTc < 1:694806/86‑1 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTc > 2:694806/1‑86 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGc > 2:787040/1‑90 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGc > 2:362757/1‑90 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGc > 2:327285/1‑90 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGc > 1:372131/1‑90 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGGAGATACCGGTAAATAGTCCGGc > 1:66244/1‑90 (MQ=255) cgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGcc > 2:24776/1‑90 (MQ=255) cgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGcc > 1:34909/1‑90 (MQ=255) gagaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCg < 1:501947/63‑1 (MQ=255) gagaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCg > 2:501947/1‑63 (MQ=255) gcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATCCCGGTAAATAGTCCGGCCCGCGCAGGCGTACa < 1:266582‑M1/59‑1 (MQ=255) gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGt > 1:256436/1‑47 (MQ=255) gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGt < 2:256436/47‑1 (MQ=255) gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa > 2:690207/1‑90 (MQ=255) gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa > 1:801690/1‑90 (MQ=255) aTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa < 2:157900/90‑1 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa > 2:84153/1‑90 (MQ=255) gTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCCGGCGTACAAAc > 1:2429/1‑90 (MQ=255) gTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAc > 2:267564/1‑90 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt > 2:252680/1‑52 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 1:252680/52‑1 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg > 2:443245/1‑90 (MQ=255) tttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCgg < 1:429079/90‑1 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc < 1:817519/90‑1 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc < 1:685170/90‑1 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 2:80442/1‑90 (MQ=255) cgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtgt < 2:46939/90‑1 (MQ=255) cgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtgt < 1:514564/90‑1 (MQ=255) ttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAgg < 2:626694‑M1/79‑1 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:323286/90‑1 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:321075/90‑1 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:443245/90‑1 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa < 1:690207/90‑1 (MQ=255) | TGCCGATGTAACAGGTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAA > NZ_CP009273/3851467‑3851640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |