New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 4607025	10 (0.280)	24 (0.670)	16/168	0.6	75.1%	intergenic (‑143/‑115)	yjjI/deoC	YjjI family glycine radical enzyme/deoxyribose‑phosphate aldolase
	?	NZ_CP009273	4607462 =	6 (0.170)					coding (323/780 nt)	deoC	deoxyribose‑phosphate aldolase

GTTCACTTTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/4606936‑4607025 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTAC  >  NZ_CP009273/4607462‑4607542                                                                                                                                                                             GTTCACTTTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAAC                                                                                   >  1:235236/1‑90        TTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCT                                                                            <  1:49871/90‑1          GATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGA                                                                          <  1:165829/90‑1              CTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGC                                                                      >  1:60715/1‑90                GATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGG                                                                    >  2:435883/1‑90                     GTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAAC                                                               >  1:844952/1‑90                       TTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGGAACGg                                                             >  2:443011/1‑89                         GCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGC                                                           <  2:137812/90‑1                             CCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGT                                                       <  2:315986/90‑1                                         TCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGTAGGTTGGTTTTGACCT                                           <  2:303855/90‑1                                         TCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCT                                           <  1:523325/90‑1                                                AAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAA                                    <  1:876852/90‑1                                                AAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAA                                    <  2:462684/90‑1                                                AAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAA                                    <  2:844952/90‑1                                                               AACCAGATCGCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCT                     >  2:609964/1‑90                                                                        gctTTATAGTGATGCAAACGCGCGCTGATGGGGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCA            <  1:737035/87‑1                                                                        GCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCA            <  2:500584/90‑1                                                                        GCATTACAGTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCA            <  2:923834/90‑1                                                                                GTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGGATGT    >  2:519224/1‑90                                                                                GTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTT                                                      >  1:922257/1‑40                                                                                GTGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTT                                                      <  2:922257/40‑1                                                                                 TGATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTA   <  1:614370/90‑1                                                                                  GATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTAC  >  2:311307/1‑90                                                                                  GATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTT                                                      >  1:624309/1‑38                                                                                  GATGCAAACGCGCGCTGATGGCGGGTAACGAGCAGGTT                                                      <  2:624309/38‑1                                                                                                                                                                             GTTCACTTTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/4606936‑4607025 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTAC  >  NZ_CP009273/4607462‑4607542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.