| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4607025 | 10 (0.280) | 24 (0.670) | 16/168 | 0.6 | 75.1% | intergenic (‑143/‑115) | yjjI/deoC | YjjI family glycine radical enzyme/deoxyribose‑phosphate aldolase |
| ? | NZ_CP009273 | 4607462 = | 6 (0.170) | coding (323/780 nt) | deoC | deoxyribose‑phosphate aldolase | |||||
CGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAG > NZ_CP009273/4607379‑4607551 | ttgatcctgatgcgtttgccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCt < 1:49871‑M2/7‑1 (MQ=255) gatcctgatgcgtttgccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGa < 1:165829‑M2/9‑1 (MQ=255) gacatcgacatcGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATg > 1:970809/1‑90 (MQ=255) ctgatgcgtttgccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGc > 1:60715‑M2/78‑90 (MQ=255) gatgcgtttgccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCgg > 2:435883‑M2/76‑90 (MQ=255) gtttgccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAAc > 1:844952‑M2/71‑90 (MQ=255) tcgCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACg > 2:345362/1‑90 (MQ=255) ttgccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGGAAcgg > 2:443011‑M2/69‑89 (MQ=255) gccaccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGc < 2:137812‑M2/24‑1 (MQ=255) ccactgacgcattcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAggt < 2:315986‑M2/28‑1 (MQ=255) tcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGTAGGTTGGTTTTGACCt < 2:303855‑M2/40‑1 (MQ=255) tcatttgaaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCt < 1:523325‑M2/40‑1 (MQ=255) aaTCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGGGaa > 1:1011786/1‑90 (MQ=255) aaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGaaa < 1:876852‑M2/47‑1 (MQ=255) aaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGaaa < 2:844952‑M2/47‑1 (MQ=255) aaagtgaattatttgaaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGaaa < 2:462684‑M2/47‑1 (MQ=255) aTCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGaaa < 2:970809/90‑1 (MQ=255) gCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGGTGGTTTTGACCTGGGGAAAGCCTGTAAagag > 1:599140/1‑90 (MQ=255) aaccagatcgcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCt > 2:609964‑M2/29‑90 (MQ=255) aaGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTtcg > 2:578539/1‑90 (MQ=255) gctttatagtgatgcaaacGCGCGCTGATGGGGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCa < 1:737035‑M2/71‑1 (MQ=255) gcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCa < 2:923834‑M2/71‑1 (MQ=255) gcattacagtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCa < 2:500584‑M2/71‑1 (MQ=255) gtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAggtt < 2:922257‑M2/29‑1 (MQ=255) gtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAggtt > 1:922257‑M2/12‑40 (MQ=255) gtgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGGATGt > 2:519224‑M2/12‑90 (MQ=255) tgatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTa < 1:614370‑M2/80‑1 (MQ=255) gatgcaaacGCGCGCTGATGGCGGGTAACGAGCAggtt < 2:624309‑M2/29‑1 (MQ=255) gatgcaaacGCGCGCTGATGGCGGGTAACGAGCAggtt > 1:624309‑M2/10‑38 (MQ=255) gatgcaaacGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTAc > 2:311307‑M2/10‑90 (MQ=255) aacgcgcgCTGATGGCGGGGAACGAGCAGGGTGGGTTTGACCTGGGGAAAGCCTGGAAAGAGGCGTGCGCGGCAGGGGATGTACTGCTGa > 1:505812/3‑90 (MQ=255) gcgcgcTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGGGCGGCAGCGAATGTACTGCTTaaaa > 2:719790/1‑89 (MQ=255) gcgcgcTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGGAGCGGATGTAATTCTGAAAg > 1:334591/1‑90 (MQ=255) | CGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGACCTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAG > NZ_CP009273/4607379‑4607551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |