mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 73 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 68.8% | ‑3.4 / 10.8 | 16 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 66.7% | 11.0 / 26.3 | 33 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,290,979 | 0 | T | G | 64.3% | 6.6 / 12.0 | 14 | T639T (ACA→ACC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 64.3% | 2.2 / 32.0 | 42 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 63.6% | 2.3 / 34.1 | 33 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 61.1% | ‑3.1 / 18.2 | 18 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 59.5% | ‑5.8 / 37.2 | 42 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 59.4% | ‑3.3 / 29.2 | 32 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 2,380,331 | 0 | T | G | 58.8% | 8.7 / 11.9 | 17 | intergenic (+21/‑82) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,370,606 | 0 | A | C | 57.9% | 10.2 / 16.5 | 20 | T106P (ACC→CCC) | ycjR | sugar phosphate isomerase/epimerase |
| * | NZ_CP009273 | 523,502 | 0 | A | C | 57.1% | 5.6 / 19.3 | 21 | pseudogene (95/708 nt) | BW25113_RS02575 | RHS domain‑containing protein |
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 57.1% | 9.4 / 17.4 | 14 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 56.7% | 28.7 / 36.8 | 30 | G20G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 1,235,279 | 0 | T | G | 56.2% | 13.2 / 17.9 | 16 | G315G (GGT→GGG) | dadX | catabolic alanine racemase DadX |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 53.8% | 31.1 / 36.2 | 26 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 1,074,934 | 0 | C | G | 53.8% | 11.2 / 17.8 | 13 | G58G (GGC→GGG) | putP | sodium/proline symporter PutP |
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 53.3% | 5.6 / 17.6 | 15 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 53.3% | 3.6 / 18.4 | 15 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 53.2% | 44.6 / 85.7 | 47 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 52.4% | ‑2.0 / 22.7 | 21 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4609974 | 38 (1.050) | 8 (0.250) | 8/152 | 1.3 | 19.5% | coding (555/1224 nt) | deoB | phosphopentomutase |
| ? | NZ_CP009273 | 4610799 = | 32 (0.990) | coding (100/720 nt) | deoD | purine‑nucleoside phosphorylase | |||||