mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 24 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 328,702 | 0 | G | T | 71.4% | 4.6 / NA | 7 | L207F (TTG→TTT) | pdeL | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| * | NZ_CP009273 | 4,440,600 | 0 | T | G | 61.9% | 4.5 / 21.0 | 21 | G274G (GGT→GGG) | ytfQ | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 60.0% | ‑1.0 / 14.5 | 15 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 3,713,220 | 0 | A | C | 60.0% | 15.1 / 22.6 | 25 | intergenic (+92/‑189) | yiaG/cspA | HTH‑type transcriptional regulator/RNA chaperone/antiterminator CspA |
| * | NZ_CP009273 | 2,162,447 | 0 | A | C | 58.8% | 7.1 / 17.9 | 17 | I85I (ATA→ATC) | yegS | lipid kinase YegS |
| * | NZ_CP009273 | 3,492,959 | 0 | T | G | 58.3% | 8.1 / 12.3 | 12 | G51G (GGT→GGG) | yhfL | YhfL family protein |
| * | NZ_CP009273 | 4,091,442 | 0 | G | T | 58.3% | ‑1.4 / 10.9 | 12 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 2,852,477 | 0 | G | A | 57.9% | ‑0.7 / 13.9 | 19 | E676K (GAA→AAA) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 57.1% | 7.2 / 15.6 | 14 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 2,999,930 | 0 | A | C | 57.1% | 20.4 / 25.9 | 21 | T103P (ACC→CCC) | ygeW | knotted carbamoyltransferase YgeW |
| * | NZ_CP009273 | 3,699,013 | 0 | T | G | 56.2% | ‑0.3 / 17.1 | 16 | P46P (CCA→CCC) | dppB | dipeptide ABC transporter permease DppB |
| * | NZ_CP009273 | 3,699,021 | 0 | T | C | 56.2% | 3.6 / 17.9 | 16 | I44V (ATC→GTC) | dppB | dipeptide ABC transporter permease DppB |
| * | NZ_CP009273 | 383,169 | 0 | T | G | 55.6% | 10.9 / 16.0 | 18 | V248G (GTG→GGG) | tauC | taurine ABC transporter permease TauC |
| * | NZ_CP009273 | 3,294,154 | 0 | G | T | 55.6% | 0.4 / 19.8 | 18 | T161N (ACC→AAC) | ubiT | SCP2 domain‑containing protein |
| * | NZ_CP009273 | 3,738,402 | 0 | A | C | 55.0% | 1.1 / 11.5 | 21 | D80A (GAC→GCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 1,018,371 | 0 | T | G | 54.5% | 8.0 / 12.7 | 11 | A326A (GCA→GCC) | yccS | YccS family putative transporter |
| * | NZ_CP009273 | 1,379,045 | 0 | T | G | 54.5% | 5.8 / 10.4 | 11 | G224G (GGT→GGG) | ycjX | YcjX family protein |
| * | NZ_CP009273 | 2,254,480 | 0 | A | C | 54.5% | 5.2 / 12.6 | 11 | V137G (GTG→GGG) | fruA | PTS fructose transporter subunit IIBC |
| * | NZ_CP009273 | 4,267,017 | 0 | T | G | 53.8% | 7.4 / 11.8 | 13 | T99P (ACT→CCT) | soxS | superoxide response transcriptional regulator SoxS |
| * | NZ_CP009273 | 500,939 | 0 | T | A | 53.3% | 9.4 / 20.0 | 15 | R190R (CGT→CGA) | ushA | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |