mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 71.0% | 20.5 / 19.1 | 38 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 65.8% | 8.3 / 23.9 | 38 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,679,388 | 0 | T | C | 64.7% | ‑5.1 / 11.9 | 17 | E1049G (GAG→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 1,499,036 | 0 | C | G | 58.3% | ‑0.3 / 11.9 | 12 | H375D (CAC→GAC) | insQ | RNA‑guided endonuclease TnpB family protein |
| * | NZ_CP009273 | 3,454,136 | 0 | A | C | 57.1% | 7.9 / 11.1 | 14 | T321P (ACC→CCC) | gspF | type II secretion system inner membrane protein GspF |
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 56.2% | 8.0 / 12.4 | 16 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 3,679,399 | 0 | G | T | 55.6% | 10.7 / 24.7 | 18 | N1045K (AAC→AAA) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 585,386 | 0 | A | G | 53.8% | 2.5 / 14.5 | 13 | L342P (CTC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 53.8% | 7.6 / 15.7 | 13 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,818,086 | 0 | T | G | 53.8% | 7.3 / 11.3 | 13 | V71G (GTA→GGA) | trmH | tRNA (guanosine(18)‑2'‑O)‑methyltransferase TrmH |
| * | NZ_CP009273 | 3,341,237 | 0 | T | G | 52.9% | 17.5 / 23.2 | 17 | V255G (GTG→GGG) | rapZ | RNase adapter RapZ |
| * | NZ_CP009273 | 1,927,669 | 0 | G | C | 52.6% | 18.2 / 28.9 | 19 | A398G (GCG→GGG) | edd | phosphogluconate dehydratase |
| * | NZ_CP009273 | 585,390 | 0 | T | G | 50.0% | 1.1 / 11.4 | 14 | T341P (ACC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 4,612,067 | 0 | A | G | 47.2% | 29.6 / 13.2 | 36 | E161G (GAG→GGG) | yjjJ | type II toxin‑antitoxin system HipA family toxin YjjJ |
| * | NZ_CP009273 | 4,594,169 | 0 | G | T | 44.7% | 24.3 / 12.1 | 38 | A65S (GCC→TCC) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,213,525 | 0 | C | T | 44.4% | 18.2 / 11.5 | 27 | R11K (AGA→AAA) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 71,566 | 0 | C | T | 43.5% | 13.6 / 10.2 | 23 | L134L (CTG→CTA) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 4,061,105 | 0 | A | G | 39.3% | 28.2 / 10.9 | 28 | L511P (CTG→CCG) | yihQ | sulfoquinovosidase |
| * | NZ_CP009273 | 4,101,675 | 0 | G | T | 37.5% | 40.4 / 14.5 | 24 | N156K (AAC→AAA) | yiiQ | YiiQ family protein |