| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4398991 = | 52 (2.350) | 3 (0.170) | 3/140 | 1.6 | 7.3% | intergenic (+79/‑101) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP009273 | 4399052 = | 34 (1.870) | intergenic (+140/‑40) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACA > NZ_CP009273/4398906‑4399079 | agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc < 2:254222/90‑1 (MQ=255)agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc < 2:532421/90‑1 (MQ=255)agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc < 2:536813/90‑1 (MQ=255)agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc < 1:278724/90‑1 (MQ=255)agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc < 1:256604/90‑1 (MQ=255)agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc < 1:230188/90‑1 (MQ=255) agcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATcc > 2:549534‑M1/85‑90 (MQ=255) agcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATcc > 1:207334‑M1/85‑90 (MQ=255) agggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc > 1:599139‑M1/82‑90 (MQ=255) agggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc > 1:593689‑M1/82‑90 (MQ=255) agggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGc > 1:185006‑M1/82‑90 (MQ=255) gggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGcc > 1:229450‑M1/81‑90 (MQ=255) gggcctgcaccgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGcc < 1:114822‑M1/10‑1 (MQ=255) gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGcc < 2:43694/90‑1 (MQ=255) gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGcc < 1:372460/90‑1 (MQ=255) gcctgcacttcgtggatgccgtaaatcatttcgctcattaatgtagtcgttgtttacggtttgcctgatgcactccgtTTATCCGGCCTa < 2:107490‑M1/12‑1 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTa < 2:119248‑M1/12‑1 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTa < 2:243396‑M1/12‑1 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTa < 2:348920‑M1/12‑1 (MQ=255) gcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTa < 2:604016‑M1/12‑1 (MQ=255) ctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTACa < 1:623170‑M1/14‑1 (MQ=255) ctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTACa < 1:138021‑M1/14‑1 (MQ=255) tACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa > 1:82495/1‑77 (MQ=255) tACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa < 2:82495/77‑1 (MQ=255) tACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATa > 2:359759/1‑90 (MQ=255) cccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt > 1:449804/1‑90 (MQ=255) cccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt > 1:604044/1‑90 (MQ=255) cccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt > 1:604115/1‑90 (MQ=255) ctctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa > 1:455961/1‑90 (MQ=255) ctctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa > 1:367691/1‑90 (MQ=255) ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:509196/76‑1 (MQ=255) ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCgg > 2:509196/1‑76 (MQ=255) ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACg > 1:385161/1‑90 (MQ=255) ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACg > 1:298981/1‑90 (MQ=255) ttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa < 1:359759/90‑1 (MQ=255) ttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa < 1:183618/90‑1 (MQ=255) ttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa < 1:409873/90‑1 (MQ=255) ttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa < 2:138997/90‑1 (MQ=255) tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaa > 1:191303/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc < 1:383196/87‑1 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc > 2:383196/1‑87 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 2:138021/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 1:65405/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 2:191152/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat > 2:292751/1‑90 (MQ=255) agagGGTTAGATTGCTGACAAAATGCGCTTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACATAATCACGCAAATTCAat > 2:337917/1‑90 (MQ=255) gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCGAATTCAata < 2:604044/90‑1 (MQ=255) gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAata < 2:604115/90‑1 (MQ=255) ggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatat < 2:367691/90‑1 (MQ=255) aGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa < 2:455961/90‑1 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc > 1:605818/1‑64 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc < 2:605818/64‑1 (MQ=255) gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGAt > 2:99868/1‑90 (MQ=255) cTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATc > 1:148519/1‑90 (MQ=255) aTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGc < 1:507331/90‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc < 2:417717/90‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc < 2:385161/90‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc < 1:502992/90‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc < 1:191152/90‑1 (MQ=255) cgttgtttacgttttgcctgatgcactacgtTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt < 1:188637‑M1/59‑1 (MQ=255) cTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt < 1:345144/90‑1 (MQ=255) aTGCCGGATGCGGCGCGAACGCCTTATCCGGCCTATATAATCACCCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAACCGTAg < 2:587166/90‑1 (MQ=14) tttgcctgatgcactacgtTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCa < 2:192270‑M1/71‑1 (MQ=255) gATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATc > 1:207951/1‑90 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCa < 2:492264/90‑1 (MQ=255) gcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaa > 1:585185/1‑90 (MQ=255) cgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaaa < 2:61204/90‑1 (MQ=255) aCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTa < 2:589025/90‑1 (MQ=255) tTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca < 1:127287‑M1/89‑1 (MQ=255) | AGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACA > NZ_CP009273/4398906‑4399079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |