| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4398991 = | 52 (2.350) | 3 (0.170) | 3/140 | 1.6 | 7.3% | intergenic (+79/‑101) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP009273 | 4399052 = | 34 (1.870) | intergenic (+140/‑40) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCT > NZ_CP009273/4398963‑4399135 | tgtttacgttttgcctgatgcactacgtttatccggcctacatgatctctgcaatatattgaatttgcgtgattatgtaggccggataaa < 1:127287‑M2/1‑1 (MQ=255) aTGCCGGATGCGGCGCGAACGCCTTATCCGGCCTATATAATCACCCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAACCGTAg < 2:587166/90‑1 (MQ=14) tttgcctgatgcactacgtTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCa < 2:192270‑M1/71‑1 (MQ=255) gATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATc > 1:207951/1‑90 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCa < 2:492264/90‑1 (MQ=255) gcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaa > 1:585185/1‑90 (MQ=255) tgcactacgtttatccggcctacatgatctctgcaatatattgaatttgcgtgattatgtaggccggataaACGTAGTGCATCAGGCaaa < 2:192270‑M2/19‑1 (MQ=255) cgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaaa < 2:61204/90‑1 (MQ=255) aCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTa < 2:589025/90‑1 (MQ=255) tTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca < 1:127287‑M1/89‑1 (MQ=255) atccggcctacatgatctctgcaatatattgaatttgcgtgattatgtaggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACg < 1:188637‑M2/31‑1 (MQ=255) ATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACg > 1:489871‑M1/1‑90 (MQ=255) CCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAg > 1:292751‑M1/1‑90 (MQ=255) GGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTa < 1:429332‑M1/90‑1 (MQ=255) aCGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGa > 1:565278/1‑90 (MQ=255) aCGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGa > 1:477880/1‑90 (MQ=255) gCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCa > 2:506373/1‑57 (MQ=255) gCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCa < 1:506373/57‑1 (MQ=255) gCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGaaa > 1:340080/1‑90 (MQ=255) gCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGaaa < 1:346363/90‑1 (MQ=255) gCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGaaa < 1:54142/90‑1 (MQ=255) aTTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGAt < 2:148519/90‑1 (MQ=255) atatatTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACg < 1:345712/90‑1 (MQ=255) atatatTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACg < 2:65405/90‑1 (MQ=255) tatTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCa > 1:369753/1‑90 (MQ=255) ttGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATc > 2:317624/1‑90 (MQ=255) ttGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATc < 2:418962/90‑1 (MQ=255) ttGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATc > 1:103310/1‑90 (MQ=255) gCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATc > 2:618264/1‑88 (MQ=255) gCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATc < 1:618264/88‑1 (MQ=255) gagaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc < 2:168722/90‑1 (MQ=255) gagaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc > 1:604016/1‑90 (MQ=255) gagaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc < 1:198292/90‑1 (MQ=255) gagaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc < 1:598387/90‑1 (MQ=255) agaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCa < 1:175487/90‑1 (MQ=255) gaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaa < 1:265813/48‑1 (MQ=255) gaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaa > 2:265813/1‑48 (MQ=255) gaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc > 1:625962/1‑88 (MQ=255) gaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc < 2:625962/88‑1 (MQ=255) gaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAg > 2:247618/1‑90 (MQ=255) cATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGc > 2:404953/1‑90 (MQ=255) cATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGc < 2:585185/90‑1 (MQ=255) tgtaggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAg < 1:138021‑M2/76‑1 (MQ=255) tgtaggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAg < 1:623170‑M2/76‑1 (MQ=255) taggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGc < 2:243396‑M2/78‑1 (MQ=255) taggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGc < 2:348920‑M2/78‑1 (MQ=255) taggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGc < 2:604016‑M2/78‑1 (MQ=255) taggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGc < 2:119248‑M2/78‑1 (MQ=255) taggccggataaACGGAGTGCATCAGGCAAACCGTAAACAACGACTACATTAATGAGCGAAATGATTTACGGCATCCACGAAGTGCAGGc < 2:107490‑M2/78‑1 (MQ=255) ggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCGGTGCAGGccc < 1:114822‑M2/80‑1 (MQ=255) ggccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGccc > 1:229450‑M2/11‑90 (MQ=255) gccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCct > 1:185006‑M2/10‑90 (MQ=255) gccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCct > 1:593689‑M2/10‑90 (MQ=255) gccggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCct > 1:599139‑M2/10‑90 (MQ=255) ggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCctgct > 2:549534‑M2/7‑90 (MQ=255) ggataaACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCctgct > 1:207334‑M2/7‑90 (MQ=255) aCGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGc < 2:568495/78‑1 (MQ=255) aCGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGc > 1:568495/1‑78 (MQ=255) | TGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCT > NZ_CP009273/4398963‑4399135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |