mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 24.1% | 62.1 / 21.4 | 54 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,296,190 | 0 | A | G | 22.0% | 74.2 / 21.3 | 54 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.4% | 146.4 / 34.1 | 90 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,875,521 | 0 | T | C | 20.6% | 130.8 / 19.2 | 65 | A28A (GCT→GCC) | yidX | putative lipoprotein YidX |
| Marginal new junction evidence (lowest skew 10 of 329 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 89 (0.760) | 16 (0.140) | 16/522 | 4.1 | 16.2% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 82 (0.740) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4448489 = | 123 (1.050) | 13 (0.120) | 11/534 | 5.3 | 8.9% | coding (43/252 nt) | chpS | ChpS antitoxin of the ChpB‑ChpS toxin‑antitoxin system |
| ? | NC_000913 | 4448829 = | 147 (1.300) | coding (138/351 nt) | chpB | endoribonuclease toxin ChpB | |||||
| * | ? | NC_000913 | 381525 = | NA (NA) | 13 (0.110) | 11/546 | 5.4 | NA | noncoding (266/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382181 = | NA (NA) | noncoding (922/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2496403 = | 90 (0.770) | 17 (0.150) | 10/530 | 5.6 | 16.7% | coding (759/921 nt) | lpxP | palmitoleoyl acyltransferase |
| ? | NC_000913 | 2496811 = | 84 (0.750) | intergenic (+246/‑110) | lpxP/ypdK | palmitoleoyl acyltransferase/putative membrane protein YpdK | |||||
| * | ? | NC_000913 | 3620750 = | NA (NA) | 10 (0.090) | 10/550 | 5.7 | 8.5% | coding (1559/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | 3621165 = | 108 (0.920) | coding (1974/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | = 1207805 | 85 (0.730) | 9 (0.080) | 9/522 | 5.8 | 10.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 81 (0.730) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 3324092 | 85 (0.730) | 9 (0.080) | 9/536 | 5.9 | 9.4% | coding (820/849 nt) | folP | dihydropteroate synthase |
| ? | NC_000913 | = 3324432 | 92 (0.810) | coding (480/849 nt) | folP | dihydropteroate synthase | |||||
| * | ? | NC_000913 | 1481457 = | 81 (0.690) | 15 (0.130) | 9/538 | 5.9 | 16.9% | coding (549/1293 nt) | ynbD | putative phosphatase |
| ? | NC_000913 | 1481724 = | 69 (0.610) | coding (816/1293 nt) | ynbD | putative phosphatase | |||||
| * | ? | NC_000913 | = 836651 | 105 (0.900) | 14 (0.120) | 9/534 | 5.9 | 11.5% | coding (301/1086 nt) | hcxB | hydroxycarboxylate dehydrogenase B |
| ? | NC_000913 | = 836897 | 115 (1.020) | coding (547/1086 nt) | hcxB | hydroxycarboxylate dehydrogenase B | |||||
| * | ? | NC_000913 | = 4204522 | 136 (1.160) | 10 (0.090) | 9/546 | 6.0 | 8.0% | coding (1203/1326 nt) | zraR | DNA‑binding transcriptional activator ZraR |
| ? | NC_000913 | = 4204866 | 97 (0.840) | coding (1066/1290 nt) | purD | phosphoribosylamine‑‑glycine ligase | |||||