mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 22.8% | 92.4 / 18.6 | 58 | A28A (GCT→GCC) | yidX | putative lipoprotein YidX |
| * | NC_000913 | 3,875,532 | 0 | A | T | 22.4% | 118.1 / 16.4 | 58 | H32L (CAT→CTT) | yidX | putative lipoprotein YidX |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1946034 | 78 (0.710) | 8 (0.080) | 8/512 | 8.5 | 9.4% | intergenic (‑58/+81) | ruvA/yobI | Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI |
| ? | NC_000913 | = 1946036 | 78 (0.740) | intergenic (‑60/+79) | ruvA/yobI | Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI | |||||
| * | ? | NC_000913 | 2442521 = | 83 (0.760) | 6 (0.060) | 6/510 | 9.5 | 6.4% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme |
| ? | NC_000913 | 2442624 = | 95 (0.900) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 4 (0.040) | 3/450 | 10.5 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| ? | NC_000913 | = 4296394 | NA (NA) | intergenic (+600/+42) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | = 2713829 | 82 (0.750) | 4 (0.040) | 4/506 | 10.6 | 5.0% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NC_000913 | = 2713908 | 73 (0.700) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NC_000913 | = 227659 | 4 (0.040) | 11 (0.100) +CGG |
4/508 | 10.6 | 73.0% | noncoding (1901/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 227660 = | NA (NA) | noncoding (1902/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 3945979 = | 104 (0.950) | 5 (0.050) | 4/514 | 10.7 | 4.7% | noncoding (2276/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | 4039784 = | NA (NA) | noncoding (2266/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 3945961 = | 97 (0.890) | 4 (0.040) | 4/514 | 10.7 | 4.1% | noncoding (2258/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | 4039802 = | NA (NA) | noncoding (2284/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 3945961 = | 97 (0.890) | 4 (0.040) | 4/514 | 10.7 | 3.9% | noncoding (2258/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | 3945986 = | 102 (0.960) | noncoding (2283/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3424526 | 61 (0.560) | 4 (0.040) | 4/514 | 10.7 | 6.3% | noncoding (2258/2904 nt) | rrlD | 23S ribosomal RNA |
| ? | NC_000913 | 4039802 = | NA (NA) | noncoding (2284/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3424526 | 61 (0.560) | 4 (0.040) | 4/514 | 10.7 | 4.7% | noncoding (2258/2904 nt) | rrlD | 23S ribosomal RNA |
| ? | NC_000913 | 3945986 = | 103 (0.970) | noncoding (2283/2904 nt) | rrlC | 23S ribosomal RNA | |||||