breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,388,2830CT21.9% 57.5 / 12.8 32intergenic (+22/+22)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009131,388,2840AT21.9% 62.4 / 12.4 32intergenic (+23/+21)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009131,388,2850AG21.9% 55.4 / 13.5 32intergenic (+24/+20)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009134,296,0600CT21.6% 75.4 / 15.8 37intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009132,653,6920AT21.4% 53.0 / 11.7 28intergenic (+353/‑163)sseA/ryfA3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
*NC_0009132,653,6930AG21.4% 54.1 / 10.1 28intergenic (+354/‑162)sseA/ryfA3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
*NC_0009132,653,6980AT21.4% 55.1 / 11.4 28intergenic (+359/‑157)sseA/ryfA3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
*NC_000913894,9520TA21.2% 67.4 / 14.4 33intergenic (+56/‑39)potF/potGputrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase

Marginal new junction evidence (lowest skew 10 of 40 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780517 (0.470)9 (0.280) 7/228 3.1 32.8% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 22 (0.690)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 2330390 =28 (0.770)6 (0.180) 6/242 3.6 16.0% pseudogene (4013/4605 nt) yfaS pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
?NC_000913 2330449 = 37 (1.100)pseudogene (3954/4605 nt) yfaS pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
* ? NC_000913 = 173526525 (0.690)6 (0.180) 6/238 3.6 19.7% intergenic (+15/‑113) mepH/sodB murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe
?NC_000913 = 1735271 26 (0.780)intergenic (+21/‑107) mepH/sodB murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe
* ? NC_000913 = 125991846 (1.270)6 (0.170) 6/246 3.7 12.6% coding (886/1680 nt) dauA C4‑dicarboxylic acid transporter
?NC_000913 = 1259933 40 (1.170)coding (871/1680 nt) dauA C4‑dicarboxylic acid transporter
* ? NC_000913 = 73194733 (0.910)6 (0.170) 6/246 3.7 15.2% coding (2365/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 731983 36 (1.050)coding (2401/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 433694 =32 (0.880)6 (0.170) 6/246 3.7 14.9% coding (240/1104 nt) ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase
?NC_000913 433734 = 38 (1.110)coding (280/1104 nt) ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase
* ? NC_000913 3518167 =32 (0.880)5 (0.150) 5/246 4.1 14.0% coding (320/1089 nt) aroB 3‑dehydroquinate synthase
?NC_000913 3518199 = 31 (0.900)coding (288/1089 nt) aroB 3‑dehydroquinate synthase
* ? NC_000913 = 404068328 (0.770)6 (0.170) 5/256 4.2 14.9% intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4213162 41 (1.150)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 = 312957827 (0.740)4 (0.120) 4/238 4.4 11.7% pseudogene (566/1101 nt) yghO pseudogene, IS‑interrupted
?NC_000913 = 3129641 36 (1.080)pseudogene (503/1101 nt) yghO pseudogene, IS‑interrupted
* ? NC_000913 2360174 =49 (1.350)4 (0.120) 4/246 4.5 8.3% intergenic (‑22/+35) rhmT/rhmD putative L‑rhamnonate transporter/L‑rhamnonate dehydratase
?NC_000913 2360202 = 42 (1.220)intergenic (‑50/+7) rhmT/rhmD putative L‑rhamnonate transporter/L‑rhamnonate dehydratase