mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,388,283 | 0 | C | T | 21.9% | 57.5 / 12.8 | 32 | intergenic (+22/+22) | tyrR/tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| * | NC_000913 | 1,388,284 | 0 | A | T | 21.9% | 62.4 / 12.4 | 32 | intergenic (+23/+21) | tyrR/tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| * | NC_000913 | 1,388,285 | 0 | A | G | 21.9% | 55.4 / 13.5 | 32 | intergenic (+24/+20) | tyrR/tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.6% | 75.4 / 15.8 | 37 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,653,692 | 0 | A | T | 21.4% | 53.0 / 11.7 | 28 | intergenic (+353/‑163) | sseA/ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| * | NC_000913 | 2,653,693 | 0 | A | G | 21.4% | 54.1 / 10.1 | 28 | intergenic (+354/‑162) | sseA/ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| * | NC_000913 | 2,653,698 | 0 | A | T | 21.4% | 55.1 / 11.4 | 28 | intergenic (+359/‑157) | sseA/ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| * | NC_000913 | 894,952 | 0 | T | A | 21.2% | 67.4 / 14.4 | 33 | intergenic (+56/‑39) | potF/potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| Marginal new junction evidence (lowest skew 10 of 40 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 17 (0.470) | 9 (0.280) | 7/228 | 3.1 | 32.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 22 (0.690) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2330390 = | 28 (0.770) | 6 (0.180) | 6/242 | 3.6 | 16.0% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | 2330449 = | 37 (1.100) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | NC_000913 | = 1735265 | 25 (0.690) | 6 (0.180) | 6/238 | 3.6 | 19.7% | intergenic (+15/‑113) | mepH/sodB | murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe |
| ? | NC_000913 | = 1735271 | 26 (0.780) | intergenic (+21/‑107) | mepH/sodB | murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe | |||||
| * | ? | NC_000913 | = 1259918 | 46 (1.270) | 6 (0.170) | 6/246 | 3.7 | 12.6% | coding (886/1680 nt) | dauA | C4‑dicarboxylic acid transporter |
| ? | NC_000913 | = 1259933 | 40 (1.170) | coding (871/1680 nt) | dauA | C4‑dicarboxylic acid transporter | |||||
| * | ? | NC_000913 | = 731947 | 33 (0.910) | 6 (0.170) | 6/246 | 3.7 | 15.2% | coding (2365/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 731983 | 36 (1.050) | coding (2401/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 433694 = | 32 (0.880) | 6 (0.170) | 6/246 | 3.7 | 14.9% | coding (240/1104 nt) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| ? | NC_000913 | 433734 = | 38 (1.110) | coding (280/1104 nt) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase | |||||
| * | ? | NC_000913 | 3518167 = | 32 (0.880) | 5 (0.150) | 5/246 | 4.1 | 14.0% | coding (320/1089 nt) | aroB | 3‑dehydroquinate synthase |
| ? | NC_000913 | 3518199 = | 31 (0.900) | coding (288/1089 nt) | aroB | 3‑dehydroquinate synthase | |||||
| * | ? | NC_000913 | = 4040683 | 28 (0.770) | 6 (0.170) | 5/256 | 4.2 | 14.9% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 41 (1.150) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3129578 | 27 (0.740) | 4 (0.120) | 4/238 | 4.4 | 11.7% | pseudogene (566/1101 nt) | yghO | pseudogene, IS‑interrupted |
| ? | NC_000913 | = 3129641 | 36 (1.080) | pseudogene (503/1101 nt) | yghO | pseudogene, IS‑interrupted | |||||
| * | ? | NC_000913 | 2360174 = | 49 (1.350) | 4 (0.120) | 4/246 | 4.5 | 8.3% | intergenic (‑22/+35) | rhmT/rhmD | putative L‑rhamnonate transporter/L‑rhamnonate dehydratase |
| ? | NC_000913 | 2360202 = | 42 (1.220) | intergenic (‑50/+7) | rhmT/rhmD | putative L‑rhamnonate transporter/L‑rhamnonate dehydratase | |||||