mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4516399 = | 90 (0.980) | 4 (0.040) | 4/250 | NT | 4.5% | coding (279/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| ? | NC_000913 | 4516423 = | 81 (0.910) | coding (255/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein | |||||
| * | ? | NC_000913 | 4372698 = | 117 (1.270) | 3 (0.030) | 3/242 | NT | 2.6% | intergenic (+27/‑111) | groL/yjeI | Cpn60 chaperonin GroEL, large subunit of GroESL/DUF4156 family lipoprotein |
| ? | NC_000913 | 4372728 = | 111 (1.290) | intergenic (+57/‑81) | groL/yjeI | Cpn60 chaperonin GroEL, large subunit of GroESL/DUF4156 family lipoprotein | |||||
| * | ? | NC_000913 | = 4228729 | 116 (1.260) | 3 (0.030) | 3/248 | NT | 2.8% | coding (999/1632 nt) | yjbB | putative Na+/Pi‑cotransporter |
| ? | NC_000913 | = 4228761 | 99 (1.120) | coding (1031/1632 nt) | yjbB | putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913 | 3406402 = | 89 (0.970) | 4 (0.050) | 4/234 | NT | 4.5% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | NC_000913 | = 3406398 | 88 (1.060) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | NC_000913 | 2977113 = | 120 (1.310) | 4 (0.050) | 4/238 | NT | 3.7% | coding (515/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| ? | NC_000913 | 2977211 = | 97 (1.150) | coding (613/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | = 2600973 | 78 (0.850) | 3 (0.030) | 3/244 | NT | 4.0% | intergenic (+25/‑228) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit |
| ? | NC_000913 | = 2600983 | 71 (0.820) | intergenic (+35/‑218) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit | |||||
| * | ? | NC_000913 | 2379707 = | 113 (1.230) | 3 (0.030) | 3/256 | NT | 2.5% | coding (937/1296 nt) | menF | isochorismate synthase 2 |
| ? | NC_000913 | 2379724 = | 121 (1.330) | coding (920/1296 nt) | menF | isochorismate synthase 2 | |||||
| * | ? | NC_000913 | 2319747 = | 92 (1.000) | 4 (0.040) | 4/258 | NT | 4.2% | coding (130/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1570598 = | 129 (1.400) | 3 (0.040) +CCGTTACCGTTAAAC |
3/228 | NT | 3.1% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666176 = | 86 (0.940) | intergenic (‑366/+4) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||