breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4516399 =90 (0.980)4 (0.040) 4/250 NT 4.5% coding (279/2325 nt) fecA TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein
?NC_000913 4516423 = 81 (0.910)coding (255/2325 nt) fecA TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein
* ? NC_000913 4372698 =117 (1.270)3 (0.030) 3/242 NT 2.6% intergenic (+27/‑111) groL/yjeI Cpn60 chaperonin GroEL, large subunit of GroESL/DUF4156 family lipoprotein
?NC_000913 4372728 = 111 (1.290)intergenic (+57/‑81) groL/yjeI Cpn60 chaperonin GroEL, large subunit of GroESL/DUF4156 family lipoprotein
* ? NC_000913 = 4228729116 (1.260)3 (0.030) 3/248 NT 2.8% coding (999/1632 nt) yjbB putative Na+/Pi‑cotransporter
?NC_000913 = 4228761 99 (1.120)coding (1031/1632 nt) yjbB putative Na+/Pi‑cotransporter
* ? NC_000913 3406402 =89 (0.970)4 (0.050) 4/234 NT 4.5% coding (486/1350 nt) accC acetyl‑CoA carboxylase, biotin carboxylase subunit
?NC_000913 = 3406398 88 (1.060)coding (482/1350 nt) accC acetyl‑CoA carboxylase, biotin carboxylase subunit
* ? NC_000913 2977113 =120 (1.310)4 (0.050) 4/238 NT 3.7% coding (515/1032 nt) galR galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
?NC_000913 2977211 = 97 (1.150)coding (613/1032 nt) galR galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
* ? NC_000913 = 260097378 (0.850)3 (0.030) 3/244 NT 4.0% intergenic (+25/‑228) bcp/hyfA peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit
?NC_000913 = 2600983 71 (0.820)intergenic (+35/‑218) bcp/hyfA peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit
* ? NC_000913 2379707 =113 (1.230)3 (0.030) 3/256 NT 2.5% coding (937/1296 nt) menF isochorismate synthase 2
?NC_000913 2379724 = 121 (1.330)coding (920/1296 nt) menF isochorismate synthase 2
* ? NC_000913 2319747 =92 (1.000)4 (0.040) 4/258 NT 4.2% coding (130/2850 nt) rcsC hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
?NC_000913 = 2997691 NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 1570598 =129 (1.400)3 (0.040)
+CCGTTACCGTTAAAC
3/228 NT 3.1% intergenic (‑109/+47) gadC/gadB glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
?NC_000913 3666176 = 86 (0.940)intergenic (‑366/+4) gadX/gadA acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent