breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,118,8280TG25.0% 38.5 / 14.7 24intergenic (+68/+17)zapB/rraAFtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
*NC_0009134,118,8290TC25.0% 38.2 / 10.6 24intergenic (+69/+16)zapB/rraAFtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
*NC_0009134,118,8310CA25.0% 38.6 / 13.0 24intergenic (+71/+14)zapB/rraAFtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
*NC_0009131,314,6820AT22.2% 51.9 / 11.6 27intergenic (+24/+36)ompW/yciEouter membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
*NC_0009131,314,6830TA22.2% 50.7 / 11.6 27intergenic (+25/+35)ompW/yciEouter membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
*NC_0009131,314,6840AT22.2% 50.6 / 11.9 27intergenic (+26/+34)ompW/yciEouter membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
*NC_0009133,530,6710AC22.2% 47.8 / 14.3 27intergenic (+19/+44)hslO/yhgEheat shock protein Hsp33/DUF4153 family putative inner membrane protein
*NC_0009133,530,6720GC22.2% 51.9 / 14.6 27intergenic (+20/+43)hslO/yhgEheat shock protein Hsp33/DUF4153 family putative inner membrane protein
*NC_0009133,530,6730GC22.2% 58.1 / 14.2 27intergenic (+21/+42)hslO/yhgEheat shock protein Hsp33/DUF4153 family putative inner membrane protein
*NC_0009133,530,6740GT22.2% 55.5 / 11.0 27intergenic (+22/+41)hslO/yhgEheat shock protein Hsp33/DUF4153 family putative inner membrane protein
*NC_000913207,4860GT21.4% 64.2 / 11.6 28M787I (ATG→ATTdnaEDNA polymerase III alpha subunit
*NC_0009133,809,6810TA21.4% 50.7 / 11.4 28V381D (GTT→GAT) ‡waaA3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
*NC_0009133,809,6820TA21.4% 55.2 / 10.4 28V381V (GTT→GTA) ‡waaA3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
*NC_0009134,409,4101.A20.8% 53.5 / 18.8 24coding (136/732 nt)rlmB23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent
*NC_000913207,4830AC20.7% 56.2 / 12.6 29V786V (GTA→GTCdnaEDNA polymerase III alpha subunit

Marginal new junction evidence (lowest skew 10 of 56 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 59280 =56 (1.610)9 (0.300) 9/220 2.3 16.0% intergenic (+1/+407) yabP/rluA pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
?NC_000913 59320 = 46 (1.530)intergenic (+41/+367) yabP/rluA pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
* ? NC_000913 = 458910839 (1.120)6 (0.180) 6/238 3.3 14.5% intergenic (‑29/+21) yjiX/yjiY DUF466 family protein/putative transporter
?NC_000913 = 4589112 34 (1.040)intergenic (‑33/+17) yjiX/yjiY DUF466 family protein/putative transporter
* ? NC_000913 = 398661455 (1.580)6 (0.190) 6/232 3.3 10.6% noncoding (183/207 nt) glmZ sRNA antisense activator of glmS mRNA, Hfq‑dependent
?NC_000913 = 3986622 51 (1.600)noncoding (191/207 nt) glmZ sRNA antisense activator of glmS mRNA, Hfq‑dependent
* ? NC_000913 = 230478916 (0.460)6 (0.230)
+33 bp
4/188 3.3 33.7% noncoding (373/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305065 NA (NA)noncoding (649/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 3960717 =42 (1.210)6 (0.180) 6/240 3.4 14.0% coding (41/2022 nt) rep DNA helicase and single‑stranded DNA‑dependent ATPase
?NC_000913 3960760 = 34 (1.030)coding (84/2022 nt) rep DNA helicase and single‑stranded DNA‑dependent ATPase
* ? NC_000913 = 228224NA (NA)6 (0.180) 6/242 3.4 NA noncoding (2466/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228241 NA (NA)noncoding (2483/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 167096724 (0.690)5 (0.160) 5/228 3.6 18.0% intergenic (+15/‑409) ynfM/asr putative arabinose efflux transporter/acid shock‑inducible periplasmic protein
?NC_000913 = 1670981 24 (0.770)intergenic (+29/‑395) ynfM/asr putative arabinose efflux transporter/acid shock‑inducible periplasmic protein
* ? NC_000913 2940113 =30 (0.860)5 (0.150) 5/240 3.7 15.8% intergenic (+14/+30) fucR/rlmM l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
?NC_000913 2940137 = 25 (0.760)intergenic (+38/+6) fucR/rlmM l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
* ? NC_000913 427756 =25 (0.720)6 (0.180) 5/240 3.7 20.8% coding (110/1848 nt) secD SecYEG protein translocase auxillary subunit
?NC_000913 427787 = 22 (0.670)coding (141/1848 nt) secD SecYEG protein translocase auxillary subunit
* ? NC_000913 4058706 =35 (1.000)6 (0.180) 5/248 3.8 15.3% coding (300/1824 nt) typA GTP‑binding protein
?NC_000913 4058736 = 32 (0.940)coding (330/1824 nt) typA GTP‑binding protein