breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913380,0130G.50.0% 7.8 / 11.0 8intergenic (‑132/+56)frmR/yaiOregulator protein that represses frmRAB operon/outer membrane protein
*NC_0009132,090,1220AG23.1% 43.3 / 11.1 26intergenic (+76/‑70)hisL/hisGhis operon leader peptide/ATP phosphoribosyltransferase
*NC_0009132,090,1240CG23.1% 52.7 / 13.7 26intergenic (+78/‑68)hisL/hisGhis operon leader peptide/ATP phosphoribosyltransferase
*NC_0009131,190,4521.T22.2% 34.1 / 15.3 18intergenic (‑5/+164)phoP/purBresponse regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase
*NC_0009132,090,1260CT22.2% 49.3 / 10.4 27intergenic (+80/‑66)hisL/hisGhis operon leader peptide/ATP phosphoribosyltransferase
*NC_0009131,104,2560CT20.0% 59.0 / 10.3 30A102A (GCC→GCTcsgBcurlin nucleator protein, minor subunit in curli complex

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 394843426 (1.030)4 (0.170) 4/238 2.4 14.0% intergenic (+10/+15) yifE/yifB UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator
?NC_000913 = 3948439 25 (1.060)intergenic (+15/+10) yifE/yifB UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator
* ? NC_000913 = 116937926 (1.030)4 (0.170) 4/234 2.4 13.9% intergenic (+49/+33) bhsA/ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
?NC_000913 = 1169384 26 (1.130)intergenic (+54/+28) bhsA/ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
* ? NC_000913 3919777 =38 (1.500)3 (0.130) 3/240 2.8 8.7% coding (81/1542 nt) atpA F1 sector of membrane‑bound ATP synthase, alpha subunit
?NC_000913 3919798 = 27 (1.140)coding (60/1542 nt) atpA F1 sector of membrane‑bound ATP synthase, alpha subunit
* ? NC_000913 2801047 =23 (0.910)3 (0.130) 3/238 2.8 12.9% coding (83/411 nt) nrdI NrdEF cluster assembly flavodoxin
?NC_000913 2801066 = 19 (0.810)coding (102/411 nt) nrdI NrdEF cluster assembly flavodoxin
* ? NC_000913 = 4970125 (0.990)3 (0.130) 3/236 2.8 10.9% intergenic (+70/‑122) kefC/folA potassium:proton antiporter/dihydrofolate reductase
?NC_000913 = 49712 26 (1.120)intergenic (+81/‑111) kefC/folA potassium:proton antiporter/dihydrofolate reductase