breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT33.3% 102.4 / 81.7 90intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 72 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 781369 =81 (0.880)25 (0.270)
+G
12/282 7.9 32.6% noncoding (1/76 nt) lysZ tRNA‑Lys
?NC_000913 = 2521129 23 (0.250)intergenic (+3/‑44) valX/valY tRNA‑Val/tRNA‑Val
* ? NC_000913 781577 =89 (0.970)44 (0.480)
+G
9/282 9.1 44.2% noncoding (1/76 nt) lysQ tRNA‑Lys
?NC_000913 = 2521129 23 (0.250)intergenic (+3/‑44) valX/valY tRNA‑Val/tRNA‑Val
* ? NC_000913 780554 =101 (1.100)22 (0.240)
+G
9/282 9.1 26.3% noncoding (1/76 nt) lysT tRNA‑Lys
?NC_000913 = 2521129 23 (0.250)intergenic (+3/‑44) valX/valY tRNA‑Val/tRNA‑Val
* ? NC_000913 2753972 =104 (1.130)6 (0.070) 6/256 9.9 6.5% intergenic (+26/+36) bamE/ratB lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
?NC_000913 2754001 = 80 (0.970)intergenic (+55/+7) bamE/ratB lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
* ? NC_000913 696399 =90 (0.980)7 (0.080)
+TAATG
7/274 9.9 11.7% intergenic (+123/+31) ubiF/glnX 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln
?NC_000913 696542 = 20 (0.220)noncoding (75/75 nt) glnV tRNA‑Gln
* ? NC_000913 3423376 =130 (1.420)8 (0.090) 6/280 10.5 6.8% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4213162 92 (1.020)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 = 271602974 (0.810)5 (0.060) 5/260 10.6 6.6% intergenic (+19/+37) eamB/grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
?NC_000913 = 2716033 73 (0.870)intergenic (+23/+33) eamB/grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
* ? NC_000913 = 2304952NA (NA)9 (0.100)
+C
5/282 11.2 NA noncoding (536/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305105 NA (NA)intergenic (+712/+3) eco/mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
* ? NC_000913 = 230483929 (0.320)9 (0.100)
+C
5/282 11.2 23.8% noncoding (423/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305105 NA (NA)intergenic (+712/+3) eco/mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
* ? NC_000913 = 99325397 (1.060)4 (0.050) 4/260 11.2 4.3% intergenic (+19/+24) pepN/ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
?NC_000913 = 993259 91 (1.080)intergenic (+25/+18) pepN/ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase