| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 1,042,085 | IS2 (+) +5 bp | 14.6% | coding (2122‑2126/2181 nt) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 19 (0.200) | 13/262 | NT | 19.4% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1042089 | 76 (0.830) | coding (2122/2181 nt) | etk | tyrosine‑protein kinase, role in O‑antigen capsule formation | |||||
| * | ? | NC_000913 | 1042085 = | 76 (0.830) | 7 (0.070) | 7/262 | NT | 8.1% | coding (2126/2181 nt) | etk | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| ? | NC_000913 | = 1651548 | NA (NA) | noncoding (706/706 nt) | IS2 | repeat region | |||||
GATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/381407‑381260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTT < NC_000913/1042089‑1041964 gagccTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCTGCCCTTAGACATCCATCATCTTTTCTCCAATGACTAGTCGAAAAAATAGTAGTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAA < 4:302572/144‑1GATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAA > 4:107611/1‑149GATCTTTTCATGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAA > 3:309886/1‑149 CCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAG > 7:11057/1‑149 CCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAG > 5:366012/1‑149 TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGT > 2:358220/1‑148 CAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTG > 1:143835/1‑148 CAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTG > 6:428281/1‑148 TAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGAT > 5:63644/1‑149 TAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGT < 2:136960/129‑1 TAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGT > 1:136960/1‑129 TAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGT > 5:49494/1‑86 TAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGT < 6:49494/86‑1 AAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCC > 4:278795/1‑149 AGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATT < 5:428281/149‑1 AGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATT < 1:358220/149‑1 GTCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTC < 6:366012/148‑1 TCTGGAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGT < 6:63644/149‑1 GAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTT < 3:278795/147‑1 GAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTT < 2:143835/147‑1 GAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTAC > 7:368683/1‑126 GAGATTCAGGGGGCCAGTCTAAGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTAC < 8:368683/126‑1 GATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/381407‑381260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCACCGCTTACAGTTACGGCTATAACTATTACGGTTATAGTTACTCCGAGAAAGAGTAAAACTGAAAGTGGCCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTT < NC_000913/1042089‑1041964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |