BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,042,085	IS2 (+) +5 bp	14.6%	coding (2122‑2126/2181 nt)	etk ←	tyrosine‑protein kinase, role in O‑antigen capsule formation

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381260 =	NA (NA)	19 (0.200)	13/262	NT	19.4%	noncoding (1/1331 nt)	IS2	repeat region
*	?	NC_000913	= 1042089	76 (0.830)	19 (0.200)	13/262	NT	19.4%	coding (2122/2181 nt)	etk	tyrosine‑protein kinase, role in O‑antigen capsule formation
*	?	NC_000913	1042085 =	76 (0.830)	7 (0.070)	7/262	NT	8.1%	coding (2126/2181 nt)	etk	tyrosine‑protein kinase, role in O‑antigen capsule formation
*	?	NC_000913	= 1651548	NA (NA)	7 (0.070)	7/262	NT	8.1%	noncoding (706/706 nt)	IS2	repeat region

Only 100 of 106 total aligned reads displayed.

CTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACC  >  NC_000913/1041948‑1042237

gcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGCTGGCGCGt                                                                                                                                               <  3:55820‑M1/12‑1 (MQ=255)

   tGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGtt                                                                                                                                              <  3:35190/147‑1 (MQ=255)

     aGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAAt                                                                                                                                          >  5:120747/1‑149 (MQ=255)

           atgaCAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATcaca                                                                                                                                      <  7:76530/147‑1 (MQ=255)

           atgaCAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCacac                                                                                                                                     <  2:329959/148‑1 (MQ=255)

             gaCAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCAt                                                                                                                                  >  8:413366/1‑149 (MQ=255)

             gaCAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCAt                                                                                                                                  >  7:418841/1‑149 (MQ=255)

             gaCAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGGAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCAt                                                                                                                                  >  1:222655/1‑149 (MQ=255)

              gcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGCTGACGCGTTTAATCACACCAtt                                                                                                                                 <  7:76509‑M1/26‑1 (MQ=255)

                aaaCGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctc                                                                                                                                 <  3:278795‑M2/147‑22 (MQ=255)

                aaaCGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctc                                                                                                                                 <  2:143835‑M2/147‑22 (MQ=255)

                aaaCGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGa                                                                                                                               <  6:120747/149‑1 (MQ=255)

                 aaCGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAg                                                                                                                              <  3:322801/149‑1 (MQ=255)

                 aaCGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCATTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAg                                                                                                                              <  7:308257/149‑1 (MQ=255)

                  aCGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccaga                                                                                                                             <  6:63644‑M2/149‑26 (MQ=255)

                    gaagaaCTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagac                                                                                                                            <  6:366012‑M2/148‑27 (MQ=255)

                      agaaCTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATACCCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAg                                                                                                                         >  5:85020/1‑149 (MQ=255)

                       gaaCTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAgc                                                                                                                        <  2:104249/149‑1 (MQ=255)

                             tCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCtt                                                                                                                   >  2:63098/1‑148 (MQ=255)

                                aaTGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcact                                                                                                               <  5:428281‑M2/149‑40 (MQ=255)

                                aaTGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcact                                                                                                               <  1:358220‑M2/149‑40 (MQ=255)

                                aaTGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTaa                                                                                                                >  6:382759/1‑148 (MQ=255)

                                 aTGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTaa                                                                                                                <  2:45796/147‑1 (MQ=255)

                                 aTGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAata                                                                                                              <  4:347077/149‑1 (MQ=255)

                                    cGTAGACCGGAAAAGGCGTTTACGCCGCATCCGGCCAGTTTCTGTTTTACTCTTTCTGGGAGTATCTATAAGGGTATTTGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTATTCACACCATTGTGGATAGCGGCTTTTATAtt                                                                                                            <  6:85020/148‑1 (MQ=255)

                                     gTAGACCGGAAAAGGGGTTCACGCCGCTTCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTATTAGTTATAGCCGTTACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGACTTTAATATTGa                                                                                                          >  3:82686/1‑149 (MQ=255)

                                     gTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTGTTTCTCGGAGGAACTATAACCGGAATAGTTATAGCCGTAACTTTAAGCGGTGCTGGCGCGTGTTATCACTCCATTGAGTATAGCGCCGTTAATATTGa                                                                                                          >  1:157474/1‑149 (MQ=255)

                                     gTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctc                                                                                                                                 <  8:368683‑M2/126‑22 (MQ=255)

                                     gTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctc                                                                                                                                 >  7:368683‑M2/1‑105 (MQ=255)

                                     gTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGACGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGa                                                                                                          <  4:398829/149‑1 (MQ=255)

                                      tAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGAc                                                                                                         <  7:413366/149‑1 (MQ=255)

                                        gACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACgc                                                                                                       <  1:227877/149‑1 (MQ=255)

                                             gAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTTATCACACCATTGAGGATAGCGCCTTTAATATTGACgcctgcc                                                                                                  >  7:92117/1‑149 (MQ=255)

                                             gAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACgcctgcc                                                                                                  >  7:439976/1‑149 (MQ=255)

                                             gAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACgcctgcc                                                                                                  >  8:271042/1‑149 (MQ=255)

                                             gAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACgcctgcc                                                                                                  >  6:97054/1‑149 (MQ=255)

                                                  ggCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                                                                             >  4:278795‑M2/1‑92 (MQ=255)

                                                  ggCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTc                                                                                             <  8:168056/149‑1 (MQ=255)

                                                   gCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTc                                                                                             >  5:101927/1‑148 (MQ=255)

                                                   gCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTc                                                                                             >  2:286331/1‑148 (MQ=255)

                                                    cggtCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCa                                                                                           <  7:186054/146‑1 (MQ=255)

                                                         aCGCAGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGACTGTTCCAGACGc                                                                                      >  8:413466/1‑149 (MQ=255)

                                                            ccgcATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTg                                                                                    >  6:54007/1‑148 (MQ=255)

                                                            ccgcATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGCGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAatat                                                                                                             <  1:350717/123‑1 (MQ=255)

                                                            ccgcATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGAGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAatat                                                                                                             >  2:350717/1‑123 (MQ=255)

                                                             cgcATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCa                                                                                  >  7:70438/1‑149 (MQ=255)

                                                              gcATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCAt                                                                                 >  7:329925/1‑149 (MQ=255)

                                                                aTCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                               >  5:63644‑M2/1‑78 (MQ=255)

                                                                 tCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGa                                                                              >  1:92266/1‑149 (MQ=255)

                                                                    ggCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACa                                                                            >  5:232695/1‑148 (MQ=255)

                                                                    atatctccggcagcgggcttgtcatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACaa                                                                           >  2:179481‑M1/70‑149 (MQ=255)

                                                                      ccACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACaaa                                                                          <  4:92799/148‑1 (MQ=255)

                                                                      ccACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACaaa                                                                          >  3:92799/1‑148 (MQ=255)

                                                                         cTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCa                                                                      >  3:222988/1‑149 (MQ=255)

                                                                          tttCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGa                                                                                                                               <  6:361298/91‑1 (MQ=255)

                                                                          tttCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCAc                                                                     <  8:70438/149‑1 (MQ=255)

                                                                             cAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg                                                                   >  1:143835‑M2/1‑65 (MQ=255)

                                                                             cAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg                                                                   >  6:428281‑M2/1‑65 (MQ=255)

                                                                                ttttACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCttt                                                               <  4:222988/149‑1 (MQ=255)

                                                                                   tACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTgg                                                             <  1:63098/148‑1 (MQ=255)

                                                                                   ggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTg                                                              <  1:35781‑M1/93‑1 (MQ=255)

                                                                                    aCTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                               >  1:136960‑M2/1‑58 (MQ=255)

                                                                                    aCTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                               <  2:136960‑M2/129‑72 (MQ=255)

                                                                                       ctTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGgtg                                                        <  8:329925/149‑1 (MQ=255)

                                                                                        tttCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGgtgt                                                       >  2:202096/1‑149 (MQ=255)

                                                                                          tctcGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGgtgt                                                       <  7:271042/147‑1 (MQ=255)

                                                                                            tcGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTc                                                     >  3:157908/1‑147 (MQ=255)

                                                                                              ggttaagtgataacagatgtctggaaatataggggcaaatccaGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGc                                                 >  2:35781‑M1/44‑149 (MQ=255)

                                                                                              ggAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCaa                                                   <  8:418841/147‑1 (MQ=255)

                                                                                              ggAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGc                                                 <  4:361980/149‑1 (MQ=255)

                                                                                                   agtgataacagatgtctggaaatataggggaaaatacaGTGCTGGCGCTTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACATCTTTGTCGGTGTTCAAGCCaaaa                                            >  5:430976‑M1/39‑149 (MQ=255)

                                                                                                    aCTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta                                            >  2:358220‑M2/1‑42 (MQ=255)

                                                                                                     cTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg                                          >  5:366012‑M2/1‑41 (MQ=255)

                                                                                                     cTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg                                          >  7:11057‑M2/1‑41 (MQ=255)

                                                                                                     cTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAAcg                                          >  2:10765/1‑149 (MQ=255)

                                                                                                      tataACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCCCCTCTTTGGCGGTGTTCAAGCCAAAAcgc                                         >  7:419700/1‑149 (MQ=255)

                                                                                                        taACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGACTTTAATATTGACGCATGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAAcgcg                                        >  5:55331/1‑148 (MQ=255)

                                                                                                           ccGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAAc                                    >  4:120354/1‑149 (MQ=255)

                                                                                                           ccGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAAc                                    <  5:97054/149‑1 (MQ=255)

                                                                                                             gTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGgt                                                         >  5:246211/1‑126 (MQ=255)

                                                                                                                    ttATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCt                           >  1:233348/1‑149 (MQ=255)

                                                                                                                    ttATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCt                           <  5:54007/149‑1 (MQ=255)

                                                                                                                     tataGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTg                          >  1:355763/1‑149 (MQ=255)

                                                                                                                      ataGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAACACGCGCAACCAGCAGGCTg                          >  6:124432/1‑148 (MQ=255)

                                                                                                                      ataGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTg                          <  5:124432/148‑1 (MQ=255)

                                                                                                                       taGCCGTAACTGTCAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACTCATGCCTGTTCCAGACGCTGCATTGACAACCTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGGAGGCTGGt                        <  2:59618/149‑1 (MQ=255)

                                                                                                                       taGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGt                        <  8:439976/149‑1 (MQ=255)

                                                                                                                       taGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGt                        <  6:232695/149‑1 (MQ=255)

                                                                                                                          ccGTAACTGTAAGAGGTGCTGGCGCGTTTAATAACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTAAAGCCAAAACGCGCAACCAGCAGGCTGGTGc                      >  4:36947/1‑148 (MQ=255)

                                                                                                                            gTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGc                                                                                   <  5:66883/85‑1 (MQ=255)

                                                                                                                            gTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGc                                                                                   >  6:66883/1‑85 (MQ=255)

                                                                                                                               aCTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                               >  5:49494‑M2/1‑15 (MQ=255)

                                                                                                                               aCTGTAAGCGGTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                               <  6:49494‑M2/86‑72 (MQ=255)

                                                                                                                               aCTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAg                <  5:402058/149‑1 (MQ=255)

                                                                                                                                 tGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGaa              <  2:233348/149‑1 (MQ=255)

                                                                                                                                   tAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGaa              <  2:92266/147‑1 (MQ=255)

                                                                                                                                             ttagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttactactattttttcgactagtcattggagaaaagatgatggatgtctaagggcaggagaaacgcagacggcgtaccacacaggaaaggctc  <  4:302572‑M2/149‑149 (MQ=255)

                                                                                                                                             ttagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacatgaaaagatc  >  3:309886‑M2/1‑1 (MQ=255)

                                                                                                                                             ttagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatc  >  4:107611‑M2/1‑1 (MQ=255)

                                                                                                                                             tGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGAcc  >  5:46521/1‑149 (MQ=255)

CTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGAAAAGGCGTTCACGCCGCATCCGGCCACTTTCAGTTTTACTCTTTCTCGGAGTAACTATAACCGTAATAGTTATAGCCGTAACTGTAAGCGGTGCTGGCGCGTTTAATCACACCATTGAGGATAGCGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACC  >  NC_000913/1041948‑1042237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.