mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,324,837 | 0 | A | C | 22.2% | 47.9 / 14.1 | 27 | Y31S (TAT→TCT) ‡ | yciQ | enhancer of membrane protein expression; putative inner membrane protein |
| * | NC_000913 | 2,620,216 | 0 | C | T | 21.6% | 74.0 / 14.0 | 37 | intergenic (‑56/+30) | uraA/upp | uracil permease/uracil phosphoribosyltransferase |
| * | NC_000913 | 2,620,218 | 0 | T | A | 21.6% | 74.5 / 17.7 | 37 | intergenic (‑58/+28) | uraA/upp | uracil permease/uracil phosphoribosyltransferase |
| * | NC_000913 | 2,768,609 | 0 | T | C | 21.6% | 67.4 / 15.6 | 37 | intergenic (+36/‑56) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| * | NC_000913 | 1,324,838 | 0 | T | A | 21.4% | 52.5 / 11.4 | 28 | Y31* (TAT→TAA) ‡ | yciQ | enhancer of membrane protein expression; putative inner membrane protein |
| * | NC_000913 | 1,324,839 | 0 | G | T | 21.4% | 57.0 / 12.0 | 28 | E32* (GAA→TAA) | yciQ | enhancer of membrane protein expression; putative inner membrane protein |
| * | NC_000913 | 1,351,222 | 0 | T | G | 21.4% | 49.2 / 13.8 | 28 | intergenic (‑183/+185) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| * | NC_000913 | 1,351,227 | 0 | A | T | 21.4% | 48.8 / 11.4 | 28 | intergenic (‑188/+180) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| * | NC_000913 | 1,351,228 | 0 | G | C | 21.4% | 57.6 / 13.9 | 28 | intergenic (‑189/+179) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| * | NC_000913 | 1,351,229 | 0 | A | T | 21.4% | 53.2 / 11.5 | 28 | intergenic (‑190/+178) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| * | NC_000913 | 1,351,234 | 0 | C | A | 21.4% | 58.4 / 12.5 | 28 | intergenic (‑195/+173) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| * | NC_000913 | 2,768,614 | 0 | A | C | 21.1% | 78.3 / 20.7 | 38 | intergenic (+41/‑51) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| * | NC_000913 | 2,768,615 | 0 | G | T | 21.1% | 94.3 / 17.7 | 38 | intergenic (+42/‑50) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| * | NC_000913 | 2,768,620 | 0 | G | A | 21.1% | 76.9 / 14.3 | 38 | intergenic (+47/‑45) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| * | NC_000913 | 3,657,603 | 0 | T | A | 20.8% | 100.7 / 22.8 | 48 | intergenic (+36/+383) | hdeD/arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| * | NC_000913 | 3,241,781 | 0 | C | T | 20.7% | 56.2 / 10.8 | 29 | intergenic (‑37/+46) | ygjV/uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| * | NC_000913 | 3,131,524 | 0 | A | G | 20.0% | 66.1 / 13.0 | 35 | S295S (AGT→AGC) ‡ | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 3,131,525 | 0 | C | T | 20.0% | 73.1 / 11.5 | 35 | S295N (AGT→AAT) ‡ | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 3,241,786 | 0 | C | T | 20.0% | 61.0 / 10.1 | 30 | intergenic (‑42/+41) | ygjV/uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2632583 | 40 (1.100) | 6 (0.180) | 6/222 | 2.8 | 12.9% | intergenic (‑48/+21) | guaA/guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| ? | NC_000913 | = 2632588 | 44 (1.310) | intergenic (‑53/+16) | guaA/guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase | |||||
| * | ? | NC_000913 | 3866983 = | 62 (1.700) | 6 (0.180) | 6/226 | 2.9 | 9.2% | intergenic (‑86/+26) | ibpB/ibpA | heat shock chaperone/heat shock chaperone |
| ? | NC_000913 | 3867002 = | 60 (1.750) | intergenic (‑105/+7) | ibpB/ibpA | heat shock chaperone/heat shock chaperone | |||||
| * | ? | NC_000913 | 3743832 = | 57 (1.570) | 6 (0.180) | 6/224 | 2.9 | 10.7% | coding (90/468 nt) | yiaL | DUF386 family protein |
| ? | NC_000913 | 3743855 = | 47 (1.380) | coding (113/468 nt) | yiaL | DUF386 family protein | |||||
| * | ? | NC_000913 | = 3202956 | 34 (0.930) | 6 (0.170) | 6/228 | 2.9 | 14.6% | coding (1066/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| ? | NC_000913 | = 3202969 | 38 (1.100) | coding (1079/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase | |||||
| * | ? | NC_000913 | = 2903390 | 26 (0.710) | 5 (0.150) | 5/222 | 3.1 | 15.9% | intergenic (+16/+1357) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | = 2903398 | 29 (0.860) | intergenic (+24/+1349) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913 | 1343551 = | 22 (0.600) | 5 (0.150) | 5/216 | 3.1 | 18.6% | intergenic (‑223/+46) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family |
| ? | NC_000913 | 1343581 = | 24 (0.730) | intergenic (‑253/+16) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family | |||||
| * | ? | NC_000913 | 2263448 = | 44 (1.210) | 8 (0.230) | 5/230 | 3.2 | 16.6% | coding (48/1131 nt) | fruB | fused fructose‑specific PTS enzymes: IIA component/HPr component |
| ? | NC_000913 | 2263467 = | 38 (1.090) | coding (29/1131 nt) | fruB | fused fructose‑specific PTS enzymes: IIA component/HPr component | |||||
| * | ? | NC_000913 | 984483 = | 26 (0.710) | 5 (0.150) | 5/224 | 3.2 | 16.1% | intergenic (+186/+36) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent |
| ? | NC_000913 | 984503 = | 28 (0.820) | intergenic (+206/+16) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 165854 | 27 (0.740) | 5 (0.150) | 5/226 | 3.2 | 15.5% | coding (1125/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase |
| ? | NC_000913 | = 165878 | 29 (0.850) | coding (1149/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase | |||||
| * | ? | NC_000913 | 63691 = | 18 (0.490) | 6 (0.170) | 5/228 | 3.2 | 25.5% | coding (2090/2352 nt) | polB | DNA polymerase II |
| ? | NC_000913 | 63710 = | 18 (0.520) | coding (2071/2352 nt) | polB | DNA polymerase II | |||||