mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.0% | 54.7 / 46.4 | 50 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,440,295 | 0 | A | T | 25.0% | 36.1 / 12.2 | 24 | intergenic (‑175/+90) | yfcJ/fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| * | NC_000913 | 2,440,296 | 0 | T | G | 25.0% | 37.8 / 15.4 | 24 | intergenic (‑176/+89) | yfcJ/fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| * | NC_000913 | 2,440,297 | 0 | C | A | 24.0% | 48.5 / 12.7 | 25 | intergenic (‑177/+88) | yfcJ/fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| * | NC_000913 | 2,440,298 | 0 | A | T | 24.0% | 38.4 / 11.9 | 25 | intergenic (‑178/+87) | yfcJ/fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| * | NC_000913 | 2,032,336 | 0 | G | C | 21.2% | 74.8 / 17.5 | 33 | intergenic (‑19/+48) | dcm/yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| Marginal new junction evidence (lowest skew 10 of 70 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171803 | 53 (1.310) | 14 (0.350) | 9/256 | 2.7 | 19.3% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 65 (1.630) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3967703 | 54 (1.330) | 8 (0.220) | 8/236 | 2.7 | 13.3% | intergenic (+27/‑213) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3967707 | 55 (1.490) | intergenic (+31/‑209) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | 3423376 = | 51 (1.260) | 9 (0.230) +TTGATGT |
8/246 | 2.8 | 15.0% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213155 | 57 (1.400) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 577253 = | 53 (1.310) | 7 (0.180) | 7/244 | 3.1 | 12.3% | intergenic (‑428/‑145) | nmpC/essD | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein |
| ? | NC_000913 | 577275 = | 50 (1.310) | intergenic (‑450/‑123) | nmpC/essD | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein | |||||
| * | ? | NC_000913 | = 3528142 | 46 (1.130) | 6 (0.160) | 6/240 | 3.3 | 11.6% | coding (1674/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | = 3528152 | 49 (1.310) | coding (1684/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.160) | 6/242 | 3.3 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1865670 = | 38 (0.940) | 5 (0.140) | 5/236 | 3.6 | 11.3% | intergenic (‑34/+56) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| ? | NC_000913 | 1865695 = | 44 (1.190) | intergenic (‑59/+31) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery | |||||
| * | ? | NC_000913 | = 3558690 | 55 (1.350) | 5 (0.130) | 5/244 | 3.7 | 8.2% | coding (423/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 | = 3558719 | 60 (1.570) | coding (452/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
| * | ? | NC_000913 | 3239599 = | 29 (0.710) | 4 (0.140) +37 bp |
3/186 | 3.7 | 15.3% | intergenic (+54/‑345) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| ? | NC_000913 | 3504854 = | 33 (0.810) | intergenic (+71/+81) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 11 (0.280) | 5/248 | 3.7 | 100% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 0 (0.000) | noncoding (488/1195 nt) | IS5 | repeat region | |||||