New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2887966 =	45 (1.360)	4 (0.130)	4/246	3.5	8.3%	coding (347/735 nt)	cysH	phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
	?	NC_000913	2888001 =	45 (1.430)					coding (312/735 nt)	cysH	phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGTGCTACCGAAAGCGCAGCCTGGCAGGAAGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2888001‑2887966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacgGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGA  >  NC_000913/2888001‑2888115                                                                                                                                                         CCGTGCTACCGAAAGCGCAGCCTGGCAGGAAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTT    >  4:51456/1‑149   GTGCTACCGAAAGCGCAGCCTGGCAGGAAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGA  <  3:51456/149‑1   GTGCTACCGAAAGCGCAGCCTGGCAGGAAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAA                                                   <  1:140450/100‑1   GTGCTACCGAAAGCGCAGCCTGGCAGGAAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAA                                                   >  2:140450/1‑100                                                                                                                                                         CCGTGCTACCGAAAGCGCAGCCTGGCAGGAAGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2888001‑2887966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacgGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGA  >  NC_000913/2888001‑2888115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.