New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2887966 =	45 (1.360)	4 (0.130)	4/246	3.5	8.3%	coding (347/735 nt)	cysH	phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
	?	NC_000913	2888001 =	45 (1.430)					coding (312/735 nt)	cysH	phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACCAGGTTTGCGCATTCAGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGATGCAGGCTCACCGCCG  >  NC_000913/2887855‑2888140                                                                                                                                                   |                                                                                                                                            aaCCAGGTTTGCGCATTCAGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTa                                                                                                                                           >  2:7675/1‑149 (MQ=255)             gcATTCAGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGtt                                                                                                                               >  8:137832/1‑149 (MQ=255)             gcATTCAGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGtt                                                                                                                               <  7:137832/149‑1 (MQ=255)               aTTCAGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGa                                                                                                                             <  7:105715/149‑1 (MQ=255)                   aGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCtt                                                                                                                         <  1:7675/149‑1 (MQ=255)                     ttCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCtt                                                                                                                         >  6:91786/1‑147 (MQ=255)                     ttCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCtt                                                                                                                         >  6:89582/1‑147 (MQ=255)                     ttCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGa                                                                                                                       <  5:89582/149‑1 (MQ=255)                     ttCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGa                                                                                                                       <  5:91786/149‑1 (MQ=255)                            agagCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGtt                                                                                                                               >  4:75190/1‑134 (MQ=255)                            agagCCCGGGTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGtt                                                                                                                               <  3:75190/134‑1 (MQ=255)                                        aTCGGTTCGAGTTTGTTGATGTCTTTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTcc                                                                                                               <  2:38531/138‑1 (MQ=255)                                        aTCGGATCGACTTTGTTGATGTCATTGTACTTGTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGATGAGCTTGAGTTTGTcc                                                                                                               >  1:38531/1‑138 (MQ=255)                                            gTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAAt                                                                                                 >  6:139814/1‑148 (MQ=255)                                                  cTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCgg                                                                                          <  4:81570/149‑1 (MQ=255)                                                   tttGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCgg                                                                                          >  8:134043/1‑148 (MQ=255)                                                   tttGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCgg                                                                                          >  7:15588/1‑148 (MQ=255)                                                      gttgATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAg                                                                                       <  7:134043/148‑1 (MQ=255)                                                             tCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCgg                                                                               >  5:6939/1‑149 (MQ=255)                                                              cATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCgg                                                                               >  4:45199/1‑148 (MQ=255)                                                                           aaTGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGt                                                                                     >  7:89829/1‑129 (MQ=255)                                                                           aaTGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGt                                                                                     <  8:89829/129‑1 (MQ=255)                                                                             tGCCTTCAACGCCGTGCTCCCAGAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCaa                                                                                                  <  7:24605/114‑1 (MQ=255)                                                                             tGCCTTCAACGACATGCTCCCACAGATATCCGTAGCGTGCTTCCAGCCAGGCTGCGCTATCGATAGCACGGTACACTTTCACTTTGAGCTAGAGTTATTAAGTTAAATAGTCaa                                                                                                  >  8:24605/1‑114 (MQ=255)                                                                                 ttCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCgg                                                           >  8:84013/1‑149 (MQ=255)                                                                                   cAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGt                                                          <  6:6939/148‑1 (MQ=255)                                                                                    aaCGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGa                                                        <  3:45199/149‑1 (MQ=255)                                                                                    aaCGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGa                                                        <  8:15588/149‑1 (MQ=255)                                                                                        cccTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGAt                                                    <  7:84013/149‑1 (MQ=255)                                                                                         ccTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAAc                                                                           >  2:139257/1‑125 (MQ=255)                                                                                         ccTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAAc                                                                           <  1:139257/125‑1 (MQ=255)                                                                                                ccACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGaa                                            >  7:63913/1‑149 (MQ=255)                                                                                                 cacaGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGa                                                        <  2:56916/136‑1 (MQ=255)                                                                                                 cacaGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGa                                                        >  1:56916/1‑136 (MQ=255)                                                                                                     gTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATcc                                       <  5:139814/149‑1 (MQ=255)                                                                                                             tAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCAc                                                 <  1:117559/131‑1 (MQ=255)                                                                                                             tAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCAc                                                 >  2:117559/1‑131 (MQ=255)                                                                                                               gCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAAttt                             >  5:27353/1‑149 (MQ=255)                                                                                                                           ccAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGAt                 <  6:27353/149‑1 (MQ=255)                                                                                                                            cAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGATg                >  1:119746/1‑149 (MQ=255)                                                                                                                              ggCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCgg                                                           >  4:102005/1‑104 (MQ=255)                                                                                                                              ggCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCgg                                                           <  3:102005/104‑1 (MQ=255)                                                                                                                                      tttCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGATGCAGGCTCAcc      >  2:51144/1‑149 (MQ=255)                                                                                                                                        tCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGATGCAGGCTCAcc      <  1:51144/147‑1 (MQ=255)                                                                                                                                          ggTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGATGCAGGCTCAccgccg  >  3:68067/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                            AACCAGGTTTGCGCATTCAGTTCTTTCAGAGCCCGGTTCATCGGTTCGACTTTGTTGATGTCATTGTACTTTTCAATGCCTTCAACGCCCTGCTCCCACAGTTTTCCGTAGCGTGCTTCCTGCCAGGCTGCGCTTTCGGTAGCACGGTACACTTTCAGGTTGAGCTTGAGTTTGTCCGTTAACTCGTCAATAAAGCGGTAGGTTTCCGGGAACAAGTAACCCGTATCGGTGAGGATCACCGGAATATCCGGGCGAATTTGATTCACCAGATGCAGGCTCACCGCCG  >  NC_000913/2887855‑2888140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.